torch==2.2.1
biopython==1.79
filelock==3.13.1
fsspec==2024.3.1
Jinja2==3.1.3
MarkupSafe==2.1.5
mpmath==1.3.0
networkx==3.2.1
numpy==1.23.5
ProDy==2.4.1
pyparsing==3.1.1
scipy==1.12.0
sympy==1.12
typing_extensions==4.10.0
ml-collections==0.1.1
dm-tree==0.1.8
setuptools

[dev]
pytest>=7.0
twine>=4.0.2
pytest-cov>=4.0
wheel
