• $SUBCMD$
Generated: $TIME$
$JOB_NAME$
$COMMAND$
| Version | $VERSION$ |
| Subcommand | $SUBCMD$ |
| Input | $INPUT$ |
| Output | $OUTPUT$ |
| Auto Mode | $AUTO_MODE$ |
| No-de-novo Mode | $NO_DENOVO_MODE$ |
| Ksize | $KSIZE$ |
| Kratio | $KRATIO$ |
| Kmin | $KMIN$ |
| Lmin | $LMIN$ |
| Lmax | $LMAX$ |
| Alignment Parameters | $ALIGNMENT_PARAMETERS$ |
| Align to Reverse Strand | $REVERSE$ |
| Total Running Time | $TOTAL_RUNNING_TIME$ |
| Number of Samples | $NUMBER_OF_SAMPLES$ |
| Number of Motifs | $NUMBER_OF_MOTIFS$ |
| Min Copy Number | $MIN_COPY_NUMBER$ |
| Mean Copy Number | $MEAN_COPY_NUMBER$ |
| Median Copy Number | $MEDIAN_COPY_NUMBER$ |
| Max Copy Number | $MAX_COPY_NUMBER$ |
The waterfall plot shows the annotated motifs in different samples. The x-axis shows the copy number index (Xth copy) and the y-axis shows the different samples. Various colors are used to represent different motifs.