numpy>=1.26
pandas>=2.1
edlib>=1.3.9
pyahocorasick>=1.4.0
tqdm>=4.66
matplotlib>=3.8
seaborn>=0.13
scipy>=1.11
pybktree>=1.1
biopython>=1.83
sourmash>=4.8
networkx>=3.2
scikit-learn>=1.3
polars>=1.0
pysam>=0.22
pyarrow>=15.0
anndata>=0.10
plotly>=5.20
kaleido==0.2.1
numba>=0.59
leidenalg>=0.11
igraph>=1.0
pooch>=1.8

[:python_version < "3.11"]
screed==1.1.2

[dev]
pytest
build

[docs]
sphinx>=5.0
sphinx-design
sphinx-rtd-theme>=1.0
sphinx-autodoc-typehints>=1.0
myst_parser
myst-nb
sphinx-book-theme==1.1.4
scanpydoc==0.17.3
sphinxcontrib-bibtex>=2.5
