Metadata-Version: 2.4
Name: jump_deps
Version: 0.0.9
Summary: Convenience package to add dependencies for JUMP exploratory analysis
Author: Alan Munoz
Project-URL: Homepage, https://github.com/broadinstitute/
Requires-Python: <3.13,>=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: boto3
Requires-Dist: matplotlib<4.0.0,>=3.8.2
Requires-Dist: polars<2.0.0,>=1.5.0
Requires-Dist: pyarrow>=15.0.0
Requires-Dist: s3fs>=2023.12.1
Requires-Dist: seaborn<1.0.0,>=0.13.2
Requires-Dist: biopython<2.0,>=1.84
Requires-Dist: broad-babel>=0.1.31
Requires-Dist: copairs<1.0.0,>=0.5.4; python_version < "3.13"
Requires-Dist: jump-portrait>=0.1.1
Requires-Dist: itables>=2.2.5
Dynamic: license-file

# JUMP hub

Repository to generate the one-in-all resource for morphological profiling, specialized in data from JUMP Cell Painting. [Here](https://broadinstitute.github.io/jump_hub/) is the main website.

This repository generates the website and also contains the dependencies to run the notebooks and ensure their correctness.

## Notes

Additionally, this repository can be used as a way to install essential dependencies for an exploratory analysis of JUMP morphological data.

Python notebooks are in the `colab` branch. Notebooks are autogenerated using [these](https://github.com/broadinstitute/2023_12_JUMP_data_only_vignettes/tree/main/tools) scripts.

## Contributing

See [CONTRIBUTING.md](CONTRIBUTING.md) for development setup and testing.
