torch<2.11,>=2.5
torchvision<0.26,>=0.20
torchaudio<2.11,>=2.5
lightning<2.7,>=2.4
numpy<3,>=1.23
scipy<2,>=1.9
pandas<3,>=1.5
scikit-learn<2,>=1.2
matplotlib<4,>=3.7
anndata<0.13,>=0.10
mudata<0.4,>=0.3
scanpy<2,>=1.10
tqdm<5,>=4.64
requests<3,>=2.28
toml<1,>=0.10
natsort<9,>=8

[dev]
pytest<9,>=7
pytest-cov<6,>=4
ruff<1,>=0.5
mypy<2,>=1.7
build<2,>=1
twine<6,>=5
pip-tools<8,>=7

[docs]
sphinx<9,>=7
sphinx-book-theme<2,>=1.1
sphinx-copybutton<1,>=0.5
sphinx-markdown-tables<1,>=0.0.17
recommonmark<1,>=0.7
nbsphinx<1,>=0.9

[notebook]
ipykernel<7,>=6
