command_id=21fdd5f4-5a35-469e-a60d-51a2353a2d5f
DAY-EC activated.
DAY-EC activated.
wrote config/samples.tsv with 41 samples
wrote config/bclconvert_scratch_dra.yaml
 M config/day_profiles/local/templates/rule_config.yaml
 M config/day_profiles/slurm/templates/rule_config.yaml
 M tests/test_bclconvert_bootstrap.sh
 M tests/test_bclconvert_multiqc.py
 M workflow/rules/bclconvert.smk
 M workflow/scripts/run_bclconvert_lane.sh
?? config/bclconvert_scratch_dra.yaml
42 config/samples.tsv
bootstrap_bclconvert: true
bclconvert:
  run_id: fasts_from_bclconvert
  run_dir: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4
  sample_sheet: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/SampleSheet.csv
  output_root: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4
  partition: bcl2fq
  constraint: "--constraint=nvme48"
  threads: 48
  mem_mb: 300000
  tmpdir: /scratch/dayoa_bclconvert_tmp
  scratch_output_root: /scratch/dayoa_bclconvert
  parallel_tiles: 8
  conversion_threads: 2
  compression_threads: 24
  decompression_threads: 8
  tile_shard_level: lane
  tile_shard_lanes: ""
  tile_shard_threads: 48
  tile_shard_mem_mb: 300000
  tile_parallel_tiles: 8
  tile_conversion_threads: 2
  tile_compression_threads: 24
  tile_decompression_threads: 8
  merge_lane_fastqs: false
  merge_tile_fastqs: false
  shared_thread_odirect_output: false
  fastq_gzip_compression_level: 1
  output_legacy_stats: true
  num_unknown_barcodes_reported: 1000
  strict_mode: false
  first_tile_only: false
  sampleproject_subdirectories: false
  keep_undetermined_fastqs: true
