command_id=bba77359-1f4b-45e9-86b1-d7208695aec6
DAY-EC activated.
DAY-EC activated.
__DATE__=2026-06-03T03:53:29+00:00

__SQUEUE__
             JOBID  PARTITION                                          NAME     USER ST       TIME  NODES                                                                                                         NODELIST(REASON)
                10     bcl2fq       run_bclconvert_lane-run_bclconvert_L003   ubuntu PD       0:00      1                                                                                                              (BeginTime)
                 9     bcl2fq       run_bclconvert_lane-run_bclconvert_L005   ubuntu PD       0:00      1                                                                                                              (BeginTime)
                 8     bcl2fq       run_bclconvert_lane-run_bclconvert_L004   ubuntu PD       0:00      1                                        (ReqNodeNotAvail, UnavailableNodes:bcl2fq-dy-nvme48-[1-4],bcl2fq-dy-nvme64-[2-3])
                 7     bcl2fq       run_bclconvert_lane-run_bclconvert_L007   ubuntu PD       0:00      1                                        (ReqNodeNotAvail, UnavailableNodes:bcl2fq-dy-nvme48-[1-4],bcl2fq-dy-nvme64-[2-3])
                 6     bcl2fq       run_bclconvert_lane-run_bclconvert_L002   ubuntu PD       0:00      1                                        (ReqNodeNotAvail, UnavailableNodes:bcl2fq-dy-nvme48-[1-4],bcl2fq-dy-nvme64-[2-3])
                 5     bcl2fq       run_bclconvert_lane-run_bclconvert_L006   ubuntu PD       0:00      1                                        (ReqNodeNotAvail, UnavailableNodes:bcl2fq-dy-nvme48-[1-4],bcl2fq-dy-nvme64-[2-3])
                 4     bcl2fq       run_bclconvert_lane-run_bclconvert_L008   ubuntu PD       0:00      1                                        (ReqNodeNotAvail, UnavailableNodes:bcl2fq-dy-nvme48-[1-4],bcl2fq-dy-nvme64-[2-3])
                 3     bcl2fq       run_bclconvert_lane-run_bclconvert_L003   ubuntu PD       0:00      1                                                                                                              (BeginTime)
                 2     bcl2fq       run_bclconvert_lane-run_bclconvert_L001   ubuntu PD       0:00      1                                                                                                              (BeginTime)
                 1     bcl2fq                         bcl2fq_scratch_to_dra   ubuntu PD       0:00      1                                                                                                              (BeginTime)

__SACCT_10__

__BCL2FQ_NODES__
NODELIST STATE CPUS MEMORY AVAIL_FEATURES REASON
bcl2fq-dy-nvme48-1 down# 48 373555 dynamic,nvme48 (Code:InsufficientInstanceCapacity)Failure when resuming nodes
bcl2fq-dy-nvme48-2 down# 48 373555 dynamic,nvme48 (Code:InsufficientInstanceCapacity)Failure when resuming nodes
bcl2fq-dy-nvme48-3 down# 48 373555 dynamic,nvme48 (Code:InsufficientInstanceCapacity)Failure when resuming nodes
bcl2fq-dy-nvme48-4 down# 48 373555 dynamic,nvme48 (Code:InsufficientInstanceCapacity)Failure when resuming nodes
bcl2fq-dy-nvme64-1 idle~ 64 498073 dynamic,i4i.16xlarge,nvme64 Scheduler health check failed
bcl2fq-dy-nvme64-2 idle~ 64 498073 dynamic,i4i.16xlarge,nvme64 Scheduler health check failed
bcl2fq-dy-nvme64-3 idle% 64 498073 dynamic,i4i.16xlarge,nvme64 Scheduler health check failed
bcl2fq-dy-nvme64-4 idle~ 64 498073 dynamic,i4i.16xlarge,nvme64 none
bcl2fq-dy-nvme96-1 idle~ 96 747110 dynamic,nvme96 none
bcl2fq-dy-nvme96-2 idle~ 96 747110 dynamic,nvme96 none
bcl2fq-dy-nvme96-3 idle~ 96 747110 dynamic,nvme96 none
bcl2fq-dy-nvme96-4 idle~ 96 747110 dynamic,nvme96 none
bcl2fq-dy-nvme128-1 idle~ 128 996147 dynamic,i4i.32xlarge,nvme128 none
bcl2fq-dy-nvme128-2 idle~ 128 996147 dynamic,i4i.32xlarge,nvme128 none
bcl2fq-dy-nvme128-3 idle~ 128 996147 dynamic,i4i.32xlarge,nvme128 none
bcl2fq-dy-nvme128-4 idle~ 128 996147 dynamic,i4i.32xlarge,nvme128 none

__TMUX_TAIL__
ratch/dayoa_bclconvert_tmp, threads=1, time=5440, partition=bcl2fq, vcpu=1, dist
ribution=block, exclusive=, constraint=, exclude=, include=


            set -euo pipefail
            mkdir -p /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_
from_bclconvert_l003_scratch_test/logs
            : > /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_
bclconvert_l003_scratch_test/logs/run_bclconvert.lane_fastqs_ready.log
            printf 'merge_lane_fastqs=false; lane FASTQs remain under %s for lan
es %s\n' \
              /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bc
lconvert_l003_scratch_test/lane_fastqs L003 >> /fsx/run_dir_mounts/20260514_LH01
106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/run_bclconvert.
lane_fastqs_ready.log
            touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fro
m_bclconvert_l003_scratch_test/logs/bclconvert.done


[Wed Jun  3 03:46:23 2026]
localrule produce_bclconvert_fastqs:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_scratch_test/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106_
0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/bclconvert.done
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_scratch_test/fastqs.complete
    log: results/day/hg38/logs/produce_bclconvert_fastqs.log
    jobid: 0
    benchmark: results/day/hg38/benchmarks/produce_bclconvert_fastqs.bench.tsv
    reason: Missing output files: results/day/hg38/benchmarks/produce_bclconvert
_fastqs.bench.tsv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fr
om_bclconvert_l003_scratch_test/fastqs.complete; Input files updated by another
job: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_
l003_scratch_test/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106_0009_B
23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/bclconvert.done
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/de
v/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=b
lock, exclusive=, constraint=, exclude=, include=

touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert
_l003_scratch_test/fastqs.complete
Job stats:
job                           count    min threads    max threads
--------------------------  -------  -------------  -------------
bclconvert_validate_inputs        1              1              1
produce_bclconvert_fastqs         1              1              1
run_bclconvert                    1              1              1
run_bclconvert_lane               1             48             48
total                             4              1             48

Reasons:
    (check individual jobs above for details)
    input files updated by another job:
        produce_bclconvert_fastqs, run_bclconvert, run_bclconvert_lane
    missing output files:
        bclconvert_validate_inputs, produce_bclconvert_fastqs, run_bclconvert, r
un_bclconvert_lane

This was a dry-run (flag -n). The order of jobs does not reflect the order of ex
ecution.
RETURN CODE: 0
[Dslu](DAYOA) dy-r produce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime -
-configfile config/bclconvert_l003_scratch.yaml
Your config files in /fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_scratch_2
0260603T033830Z/daylily-omics-analysis/config/day_profiles/slurm are newer than
the templates. clear 2 go.
Executing: snakemake --profile=/fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq
_scratch_20260603T033830Z/daylily-omics-analysis/config/day_profiles/slurm produ
ce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime --configfile config/bclco
nvert_l003_scratch.yaml
Config file config/global.yaml is extended by additional config specified via th
e command line.
loading global: /fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_scratch_202606
03T033830Z/daylily-omics-analysis/config/global_AWSPC.yaml
Config file config/global_AWSPC.yaml is extended by additional config specified
via the command line.
loading profile rule_config: /fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_s
cratch_20260603T033830Z/daylily-omics-analysis/config/day_profiles/slurm/rule_co
nfig.yaml
Config file config/day_profiles/slurm/rule_config.yaml is extended by additional
 config specified via the command line.
INFO::: The genome build hg38 is supported.  The genome build prefix is 'chr''.
...WARNING: No aligners set in the config.
aligners (final): []
...INFO: No dedupers set in config. Defaulting to na (no dedup).
deduper (final): [na]
...WARNING: No snv_callers set in the config.
SNV Callers (final): []
Somatic SNV Callers:[senttn]
... WARNING: No sv_callers set in the config.
SV Callers (final): []
A    N   A   L  Y S I S    SAMPLE TABLE DETECTED ::: /fsx/analysis_results/dyec0
602bcl/bcl_l003_bcl2fq_scratch_20260603T033830Z/daylily-omics-analysis/config/sa
mples.tsv
A    N   A   L  Y S I S    UNIT TABLE DETECTED ::: /fsx/analysis_results/dyec060
2bcl/bcl_l003_bcl2fq_scratch_20260603T033830Z/daylily-omics-analysis/config/unit
s.tsv
Building DAG of jobs...
Using shell: /home/ubuntu/miniconda3/envs/DAY-EC/bin/bash
Provided cluster nodes: 1
Job stats:
job                           count    min threads    max threads
--------------------------  -------  -------------  -------------
bclconvert_validate_inputs        1              1              1
produce_bclconvert_fastqs         1              1              1
run_bclconvert                    1              1              1
run_bclconvert_lane               1             48             48
total                             4              1             48

Select jobs to execute...

[Wed Jun  3 03:48:46 2026]
localrule bclconvert_validate_inputs:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/SampleSheet.csv,
 /fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_scratch_20260603T033830Z/dayl
ily-omics-analysis/config/samples.tsv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_scratch_test/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106
_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/normalized.SampleSheet.
csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_
l003_scratch_test/tables/samplesheet_rows.tsv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_scratch_test/logs/bclconvert_validate_inputs.log
    jobid: 1
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_scratch_test/benchmarks/bclconvert_validate_inputs.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/validated.ok, /fsx/run_dir_m
ounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/n
ormalized.SampleSheet.csv
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/de
v/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=b
lock, exclusive=, constraint=, exclude=, include=


        set -euo pipefail
        mkdir -p /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from
_bclconvert_l003_scratch_test/logs /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4/fasts_from_bclconvert_l003_scratch_test/tables
        : > /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_scratch_test/logs/bclconvert_validate_inputs.log
        if [ -z /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 ]; then
            echo "bclconvert.run_dir is required" >> /fsx/run_dir_mounts/2026051
4_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/bclconver
t_validate_inputs.log
            exit 2
        fi
        if [ ! -d /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4 ]; then
            echo "bclconvert.run_dir does not exist: /fsx/run_dir_mounts/2026051
4_LH01106_0009_B23TVLGLT4" >> /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGL
T4/fasts_from_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.log
            exit 2
        fi
        if [ "true" = "false" ]; then
            echo "keep_undetermined_fastqs=false is unsupported for the bclconve
rt bootstrap path" >> /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts
_from_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.log
            exit 2
        fi
        bcl_extra_args=
        if [ -n "$bcl_extra_args" ]; then
            echo "bclconvert.extra_args is not supported in this shell-only boot
strap workflow" >> /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_fr
om_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.log
            exit 2
        fi
        python workflow/scripts/parse_bclconvert_samplesheet.py \
          --sample-sheet /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/Sa
mpleSheet.csv \
          --samples-tsv /fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_scratc
h_20260603T033830Z/daylily-omics-analysis/config/samples.tsv \
          --normalized-out /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
fasts_from_bclconvert_l003_scratch_test/normalized.SampleSheet.csv \
          --rows-out /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_
from_bclconvert_l003_scratch_test/tables/samplesheet_rows.tsv \
          --runtime-version 4.0.3 \
          --sampleproject-subdirectories false \
          --warnings-out /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fa
sts_from_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.warnings.l
og \
          >> /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bcl
convert_l003_scratch_test/logs/bclconvert_validate_inputs.log 2>&1
        touch /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bc
lconvert_l003_scratch_test/logs/validated.ok

Activating conda environment: ../../../../resources/environments/conda/ubuntu/ip
-10-0-0-235/9d47d7d0d1fd2da30ac182cf088a614c_
[Wed Jun  3 03:48:47 2026]
Finished job 1.
1 of 4 steps (25%) done
Select jobs to execute...

[Wed Jun  3 03:48:47 2026]
rule run_bclconvert_lane:
    input: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclco
nvert_l003_scratch_test/logs/validated.ok, /fsx/run_dir_mounts/20260514_LH01106_
0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/normalized.SampleSheet.c
sv
    output: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclc
onvert_l003_scratch_test/lane_reports/L003/bclconvert.done, /fsx/run_dir_mounts/
20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/lane_fa
stqs/L003/Reports/fastq_list.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_scratch_test/lane_fastqs/L003/Reports/Demultip
lex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_scratch_test/lane_reports/L003/SampleSheet.csv
    log: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconv
ert_l003_scratch_test/logs/run_bclconvert.L003.log
    jobid: 3
    benchmark: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_b
clconvert_l003_scratch_test/benchmarks/run_bclconvert.L003.bench.tsv
    reason: Missing output files: /fsx/run_dir_mounts/20260514_LH01106_0009_B23T
VLGLT4/fasts_from_bclconvert_l003_scratch_test/lane_reports/L003/bclconvert.done
, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l00
3_scratch_test/lane_reports/L003/SampleSheet.csv, /fsx/run_dir_mounts/20260514_L
H01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/lane_fastqs/L003/
Reports/Demultiplex_Stats.csv, /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLG
LT4/fasts_from_bclconvert_l003_scratch_test/lane_fastqs/L003/Reports/fastq_list.
csv; Input files updated by another job: /fsx/run_dir_mounts/20260514_LH01106_00
09_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/validated.ok, /fsx/ru
n_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch
_test/normalized.SampleSheet.csv
    wildcards: lane=L003
    threads: 48
    resources: mem_mb=300000, mem_mib=286103, disk_mb=1000, disk_mib=954, tmpdir
=<TBD>, threads=48, time=5440, partition=bcl2fq, vcpu=48, distribution=block, ex
clusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/scratch/dayoa_bclconvert_tmp bash workflow/scripts/run_bclconvert_lane.s
h docker://nfcore/bclconvert:4.0.3 /fsx/run_dir_mounts/20260514_LH01106_0009_B23
TVLGLT4 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_scratch_test/lane_fastqs/L003 /fsx/run_dir_mounts/20260514_LH01106_0009_
B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/normalized.SampleSheet.csv 3
/fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_
scratch_test/lane_reports/L003/SampleSheet.csv false false false 1 8 2 24 8 fals
e true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '
{}'  48 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconve
rt_l003_scratch_test/logs/run_bclconvert.L003.log /fsx/run_dir_mounts/20260514_L
H01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/lane_fastqs/L003/
Reports/fastq_list.csv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fast
s_from_bclconvert_l003_scratch_test/lane_fastqs/L003/Reports/Demultiplex_Stats.c
sv /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l0
03_scratch_test/lane_reports/L003/bclconvert.done "" /scratch/dayoa_bclconvert
Submitted job 3 with external jobid '10'.


__PROCS__
ubuntu     30890   25989  0 03:16 pts/1    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 8 --rerun-triggers mtime --configfile config/bclconvert_scratch_dra.yaml
ubuntu     31067   30890  0 03:16 pts/1    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 8 --rerun-triggers mtime --configfile config/bclconvert_scratch_dra.yaml
ubuntu     31068   31067  0 03:16 pts/1    00:00:05 /home/ubuntu/miniconda3/envs/DAYOA/bin/python /home/ubuntu/miniconda3/envs/DAYOA/bin/snakemake --profile=/fsx/analysis_results/dyec0602bcl/bcl2fq_scratch_dra_dayoa_20260603/daylily-omics-analysis/config/day_profiles/slurm produce_bclconvert_fastqs -p -k -j 8 --rerun-triggers mtime --configfile config/bclconvert_scratch_dra.yaml
ubuntu     31069   31067  0 03:16 pts/1    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 8 --rerun-triggers mtime --configfile config/bclconvert_scratch_dra.yaml
ubuntu     48541   46045  0 03:48 pts/2    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime --configfile config/bclconvert_l003_scratch.yaml
ubuntu     48717   48541  0 03:48 pts/2    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime --configfile config/bclconvert_l003_scratch.yaml
ubuntu     48718   48717  1 03:48 pts/2    00:00:05 /home/ubuntu/miniconda3/envs/DAYOA/bin/python /home/ubuntu/miniconda3/envs/DAYOA/bin/snakemake --profile=/fsx/analysis_results/dyec0602bcl/bcl_l003_bcl2fq_scratch_20260603T033830Z/daylily-omics-analysis/config/day_profiles/slurm produce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime --configfile config/bclconvert_l003_scratch.yaml
ubuntu     48719   48717  0 03:48 pts/2    00:00:00 bash bin/day_run produce_bclconvert_fastqs -p -k -j 1 --rerun-triggers mtime --configfile config/bclconvert_l003_scratch.yaml

__DEST_SUMMARY__
total_files=6
fastq_files=0
done_files=0
report_csv_files=0
2026-06-03 03:48 0 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/validated.ok
2026-06-03 03:48 259 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.log
2026-06-03 03:48 259 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/logs/bclconvert_validate_inputs.warnings.log
2026-06-03 03:48 306 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/benchmarks/bclconvert_validate_inputs.bench.tsv
2026-06-03 03:48 4385 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/tables/samplesheet_rows.tsv
2026-06-03 03:48 5714 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/normalized.SampleSheet.csv

__BENCHMARKS__
2026-06-03 03:48 306 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/benchmarks/bclconvert_validate_inputs.bench.tsv
--- /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/fasts_from_bclconvert_l003_scratch_test/benchmarks/bclconvert_validate_inputs.bench.tsv ---
s	h:m:s	max_rss	max_vms	max_uss	max_pss	io_in	io_out	mean_load	cpu_time	hostname	ip	nproc	cpu_efficiency	instance_type	region_az	spot_cost	snakemake_threads	task_cost
0.6368	0:00:00	15.75	39.79	9.14	9.38	35.26	0.00	0.00	0.04	ip-10-0-0-235	44.255.242.91	32	0.0628	r7i.8xlarge	us-west-2d	0.957600	1	0.000005

__SCRATCH_SUMMARY__
scratch root absent on headnode: /scratch/dayoa_bclconvert
