LICENSE
README.md
pyproject.toml
setup.py
src/nucleisky/__init__.py
src/nucleisky.egg-info/PKG-INFO
src/nucleisky.egg-info/SOURCES.txt
src/nucleisky.egg-info/dependency_links.txt
src/nucleisky.egg-info/requires.txt
src/nucleisky.egg-info/top_level.txt
src/nucleisky/nucleisky2d/__init__.py
src/nucleisky/nucleisky2d/config.py
src/nucleisky/nucleisky2d/demo_utils.py
src/nucleisky/nucleisky2d/export.py
src/nucleisky/nucleisky2d/features.py
src/nucleisky/nucleisky2d/io.py
src/nucleisky/nucleisky2d/pipeline.py
src/nucleisky/nucleisky2d/preprocess.py
src/nucleisky/nucleisky2d/segmentation.py
src/nucleisky/nucleisky2d/types.py
src/nucleisky/nucleisky2d/utils.py
src/nucleisky/nucleisky2d/visualization.py
src/nucleisky/nucleisky2d/matching/__init__.py
src/nucleisky/nucleisky2d/matching/geometry.py
src/nucleisky/nucleisky2d/matching/graph.py
src/nucleisky/nucleisky2d/matching/hashing.py
src/nucleisky/nucleisky2d/matching/quad.py
src/nucleisky/nucleisky2d/matching/triangle.py
src/nucleisky/nucleisky3d/__init__.py
src/nucleisky/nucleisky3d/config.py
src/nucleisky/nucleisky3d/demo_utils.py
src/nucleisky/nucleisky3d/export.py
src/nucleisky/nucleisky3d/features.py
src/nucleisky/nucleisky3d/io.py
src/nucleisky/nucleisky3d/pipeline.py
src/nucleisky/nucleisky3d/preprocess.py
src/nucleisky/nucleisky3d/segmentation.py
src/nucleisky/nucleisky3d/types.py
src/nucleisky/nucleisky3d/utils.py
src/nucleisky/nucleisky3d/visualization.py
src/nucleisky/nucleisky3d/matching/__init__.py
src/nucleisky/nucleisky3d/matching/geometry.py
src/nucleisky/nucleisky3d/matching/hashing3d.py
src/nucleisky/nucleisky3d/matching/pyramid.py
src/nucleisky2d/__init__.py
src/nucleisky2d/segmentation.py
src/nucleisky3d/__init__.py
tests/test_api_and_pyramid_config_3d.py
tests/test_demo_utils3d.py
tests/test_export2d_inspect_image_header.py
tests/test_export3d.py
tests/test_features3d.py
tests/test_geometry3d_bbox.py
tests/test_geometry_metamorphic_phase2.py
tests/test_geometry_regression_phase1_2d.py
tests/test_geometry_regression_phase1_3d.py
tests/test_hashing3d_config.py
tests/test_hashing3d_min_inliers.py
tests/test_io2d_save_json_serialization.py
tests/test_io3d_load_transforms_any.py
tests/test_io3d_require_voxel_size_um_zyx.py
tests/test_io3d_save_tiff_zyx.py
tests/test_io3d_volume_loading_channels.py
tests/test_metadata_phase1.py
tests/test_optional_imports.py
tests/test_phase10_serialization_compatibility.py
tests/test_phase12_2d_jsonl_strict_mode.py
tests/test_phase13a_segmentation_warning_cleanup.py
tests/test_phase13b_3d_false_positive_guards.py
tests/test_phase3_integration_and_roundtrip.py
tests/test_phase3_matcher_comparison_and_perf.py
tests/test_phase4_roundtrip_schema_matcher_optional_qc.py
tests/test_phase5_optional_matrix_stress_and_export_failures.py
tests/test_phase6_byom_bounds_and_failure_modes.py
tests/test_phase7_cross_artifact_and_minsize.py
tests/test_phase8_artifact_helpers_and_unit_invariants.py
tests/test_phase9_public_api_docs_notebook_smoke.py
tests/test_pipeline2d_requires_2d_images.py
tests/test_pipeline3d.py
tests/test_pipeline3d_bbox_grid_consistency.py
tests/test_pipeline3d_centroids_from_df.py
tests/test_pipeline3d_sanitization.py
tests/test_pipeline3d_transforms_jsonl.py
tests/test_preprocess3d.py
tests/test_rotation_angle_constraints_3d.py
tests/test_segmentation3d_public_accessor.py
tests/test_visualization3d_safe_display.py
tests/test_zarr_directory_probe.py
tests/test_zarr_path_detection.py