.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
environment.yml
mkdocs.yml
napari-isbem.bat
pyproject.toml
tox.ini
.github/dependabot.yml
.github/workflows/test_and_deploy.yml
.github/workflows/update_docs.yml
.napari-hub/DESCRIPTION.md
.napari-hub/config.yml
docs/acquisition.md
docs/deployment.md
docs/file_structure.md
docs/index.md
docs/installation.md
docs/registration.md
docs/registration_limitations.md
docs/roi_coordinates.md
docs/sbemimage_integration.md
docs/storing_layers.md
docs/targeting.md
docs/images/acquisition.png
docs/images/architecture.jpg
docs/images/registration.png
docs/images/sbemimage_integration.jpg
docs/images/targeting.png
src/main.py
src/napari_isbem/__init__.py
src/napari_isbem/_version.py
src/napari_isbem/napari.yaml
src/napari_isbem.egg-info/PKG-INFO
src/napari_isbem.egg-info/SOURCES.txt
src/napari_isbem.egg-info/dependency_links.txt
src/napari_isbem.egg-info/entry_points.txt
src/napari_isbem.egg-info/requires.txt
src/napari_isbem.egg-info/top_level.txt
src/napari_isbem/_controllers/__init__.py
src/napari_isbem/_controllers/acquisition_controller.py
src/napari_isbem/_controllers/registration_controller.py
src/napari_isbem/_controllers/targeting_controller.py
src/napari_isbem/_models/__init__.py
src/napari_isbem/_models/acquisition_model.py
src/napari_isbem/_models/affine_model.py
src/napari_isbem/_models/align_planes_model.py
src/napari_isbem/_models/layer_model.py
src/napari_isbem/_models/live_viewer.py
src/napari_isbem/_models/registration_model.py
src/napari_isbem/_models/roi_data.py
src/napari_isbem/_models/stack_viewer.py
src/napari_isbem/_models/targeting_model.py
src/napari_isbem/_models/tcp_server.py
src/napari_isbem/_tests/__init__.py
src/napari_isbem/_tests/test_acquisition_model.py
src/napari_isbem/_tests/test_affine_model.py
src/napari_isbem/_tests/test_align_planes_model.py
src/napari_isbem/_tests/test_live_viewer.py
src/napari_isbem/_tests/test_registration_model.py
src/napari_isbem/_tests/test_roi_data.py
src/napari_isbem/_tests/test_targeting_model.py
src/napari_isbem/_tests/test_tcp_server.py
src/napari_isbem/_utils/general_utils.py
src/napari_isbem/_utils/image_utils.py
src/napari_isbem/_utils/registration_utils.py
src/napari_isbem/_views/__init__.py
src/napari_isbem/_views/acquisition/__init__.py
src/napari_isbem/_views/acquisition/acquisition_info.py
src/napari_isbem/_views/acquisition/acquisition_settings.py
src/napari_isbem/_views/acquisition/acquisition_view.py
src/napari_isbem/_views/acquisition/roi_settings.py
src/napari_isbem/_views/acquisition/tcp_settings.py
src/napari_isbem/_views/registration/__init__.py
src/napari_isbem/_views/registration/affine_2d.py
src/napari_isbem/_views/registration/align_planes.py
src/napari_isbem/_views/registration/registration_view.py
src/napari_isbem/_views/registration/save_load_transforms.py
src/napari_isbem/_views/registration/z_alignment.py
src/napari_isbem/_views/targeting/__init__.py
src/napari_isbem/_views/targeting/add_labels.py
src/napari_isbem/_views/targeting/add_targeting_image.py
src/napari_isbem/_views/targeting/label_settings.py
src/napari_isbem/_views/targeting/targeting_view.py
src/napari_isbem/_widgets/__init__.py
src/napari_isbem/_widgets/isbem.py