# Byte-compiled / optimized
__pycache__/
*.py[cod]
*$py.class

# Distribution / packaging
build/
dist/
*.egg-info/
*.egg

# Unit test / coverage
htmlcov/
.tox/
.coverage
.coverage.*
.pytest_cache/

# Environments
.env
.venv
env/
venv/

# IDEs
.idea/
.vscode/
*.swp
*~

# OS
.DS_Store

# dsRNAscan outputs
*.dsRNApredictions.bp
*_merged_results.txt
*_ein_results.txt
dsrnascan_*/

# EMBOSS (no longer needed, binaries are bundled)
EMBOSS-*/
EMBOSS-*.tar.gz
emboss_install/

# Temporary / logs
*.tmp
*.log

# Credentials
.pypirc
