# This file was autogenerated by uv via the following command:
#    uv pip compile --python-version=3.10 ../../pyproject.toml --extra testing --extra jit -o requirements-testing.txt
alifedata-phyloinformatics-convert==0.19.3
    # via
    #   hstrat (../../pyproject.toml)
    #   colorclade
annotated-types==0.8.0
    # via pydantic
anytree==2.13.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
astropy==6.1.7
    # via hstrat (../../pyproject.toml)
astropy-iers-data==0.2026.10.12.1.3.27
    # via astropy
biopython==1.88
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   colorclade
bitarray==3.12.2
    # via
    #   hstrat (../../pyproject.toml)
    #   bitstring
bitstring==4.4.0
    # via hstrat (../../pyproject.toml)
black==22.10.0
    # via hstrat (../../pyproject.toml)
click==8.5.0
    # via
    #   alifedata-phyloinformatics-convert
    #   black
    #   keyname
cloudpickle==3.1.2
    # via joblib
colorclade==0.3.0
    # via hstrat (../../pyproject.toml)
contexttimer==0.3.3
    # via hstrat (../../pyproject.toml)
contourpy==1.3.2
    # via matplotlib
coverage==7.16.2
    # via hstrat (../../pyproject.toml)
cppimport==26.4.17
    # via hstrat (../../pyproject.toml)
cycler==0.12.1
    # via matplotlib
decorator==5.3.1
    # via retry
dendropy==5.1.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
deprecated==1.3.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   phyloframe
distlib==0.4.3
    # via virtualenv
distutils-strtobool==0.1.0
    # via teeplot
downstream==1.23.1
    # via hstrat (../../pyproject.toml)
entrypoints==0.3
    # via flake8
ete3==3.1.3
    # via alifedata-phyloinformatics-convert
exceptiongroup==1.3.1
    # via pytest
execnet==2.1.2
    # via pytest-xdist
filelock==4.1.0
    # via
    #   cppimport
    #   python-discovery
    #   tox
    #   virtualenv
fishersrc==0.1.15
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
flake8==3.7.8
    # via hstrat (../../pyproject.toml)
fonttools==4.65.0
    # via matplotlib
formulaic==1.2.2
    # via statsmodels
idna==3.20
    # via yarl
iniconfig==2.3.1
    # via pytest
interface-meta==2.0.1
    # via formulaic
interval-search==0.5.2
    # via hstrat (../../pyproject.toml)
isort==9.0.2
    # via hstrat (../../pyproject.toml)
iterify==0.1.0
    # via hstrat (../../pyproject.toml)
iterpop==0.4.1
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
joblib==1.6.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
    #   scikit-learn
joinem==0.16.0
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   phyloframe
keyname==0.6.0
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
kiwisolver==1.5.1
    # via matplotlib
lazy-loader==0.6
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   phyloframe
llvmlite==0.50.0
    # via numba
lru-dict==1.4.1
    # via hstrat (../../pyproject.toml)
mako==1.4.3
    # via cppimport
markupsafe==3.0.4
    # via mako
matplotlib==3.10.9
    # via
    #   hstrat (../../pyproject.toml)
    #   colorclade
    #   seaborn
    #   teeplot
mccabe==0.6.1
    # via flake8
mmh3==5.3.1
    # via hstrat (../../pyproject.toml)
more-itertools==11.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   keyname
    #   phyloframe
mpmath==1.4.1
    # via hstrat (../../pyproject.toml)
multidict==7.1.0
    # via yarl
mypy==0.991
    # via hstrat (../../pyproject.toml)
mypy-extensions==1.1.0
    # via
    #   black
    #   isort
    #   mypy
    #   typing-inspect
nanto==0.1.1
    # via alifedata-phyloinformatics-convert
narwhals==2.27.1
    # via formulaic
networkx==3.4.2
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
numba==0.68.0
    # via hstrat (../../pyproject.toml)
numpy==2.2.6
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   astropy
    #   biopython
    #   colorclade
    #   contourpy
    #   downstream
    #   fishersrc
    #   formulaic
    #   matplotlib
    #   numba
    #   pandas
    #   patsy
    #   phyloframe
    #   pyerfa
    #   scikit-learn
    #   scipy
    #   seaborn
    #   statsmodels
opytional==0.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   colorclade
    #   downstream
    #   phyloframe
ordered-set==4.1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
packaging==26.3
    # via
    #   hstrat (../../pyproject.toml)
    #   astropy
    #   lazy-loader
    #   matplotlib
    #   pandera
    #   patsy
    #   phyloframe
    #   pytest
    #   statsmodels
    #   tox
    #   virtualenv
pandas==2.3.3
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   formulaic
    #   phyloframe
    #   seaborn
    #   statsmodels
pandera==0.34.1
    # via hstrat (../../pyproject.toml)
pathspec==1.1.1
    # via black
patsy==1.0.3
    # via statsmodels
phyloframe==0.18.1
    # via hstrat (../../pyproject.toml)
phylotrackpy==0.2.4
    # via hstrat (../../pyproject.toml)
pillow==12.3.0
    # via matplotlib
platformdirs==4.12.4
    # via
    #   black
    #   virtualenv
pluggy==1.6.0
    # via
    #   pytest
    #   tox
polars==2.0.0
    # via
    #   hstrat (../../pyproject.toml)
    #   downstream
    #   joinem
    #   phyloframe
polars-runtime-32==2.0.0
    # via polars
polars-runtime-64==2.0.0
    # via polars
prettytable==3.18.0
    # via hstrat (../../pyproject.toml)
propcache==0.5.4
    # via yarl
py==1.11.0
    # via
    #   retry
    #   tox
pyarrow==25.0.1
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
    #   polars
pybind11==3.1.0
    # via cppimport
pycodestyle==2.5.0
    # via flake8
pydantic==2.14.1
    # via pandera
pydantic-core==2.50.1
    # via pydantic
pyerfa==2.0.1.5
    # via astropy
pyflakes==2.1.1
    # via flake8
pyparsing==3.3.3
    # via matplotlib
pytest==8.3.3
    # via
    #   hstrat (../../pyproject.toml)
    #   pytest-forked
    #   pytest-xdist
pytest-forked==1.7.5
    # via pytest-xdist
pytest-xdist==2.5.0
    # via hstrat (../../pyproject.toml)
python-dateutil==2.9.0.post0
    # via
    #   matplotlib
    #   pandas
python-discovery==1.6.2
    # via virtualenv
python-slugify==9.1.3
    # via
    #   hstrat (../../pyproject.toml)
    #   teeplot
pytz==2026.5
    # via pandas
pyyaml==6.0.1
    # via
    #   hstrat (../../pyproject.toml)
    #   astropy
retry==0.9.2
    # via keyname
ruff==0.1.11
    # via hstrat (../../pyproject.toml)
safe-assert==0.2.0
    # via hstrat (../../pyproject.toml)
scikit-learn==1.7.2
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
scipy==1.14.1
    # via
    #   hstrat (../../pyproject.toml)
    #   formulaic
    #   scikit-learn
    #   statsmodels
seaborn==0.13.2
    # via
    #   hstrat (../../pyproject.toml)
    #   colorclade
setuptools==80.10.2
    # via
    #   hstrat (../../pyproject.toml)
    #   cppimport
    #   dendropy
six==1.17.0
    # via
    #   python-dateutil
    #   tox
sortedcontainers==2.4.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   phyloframe
statsmodels==0.15.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
teeplot==1.5.0
    # via hstrat (../../pyproject.toml)
text-unidecode==1.3
    # via python-slugify
threadpoolctl==3.7.0
    # via scikit-learn
tibs==0.5.7
    # via bitstring
toml==0.10.2
    # via tox
tomli==2.5.0
    # via
    #   black
    #   mypy
    #   pytest
tox==3.24.0
    # via hstrat (../../pyproject.toml)
tqdist==1.0
    # via
    #   hstrat (../../pyproject.toml)
    #   phyloframe
tqdm==4.70.1
    # via
    #   hstrat (../../pyproject.toml)
    #   joinem
    #   phyloframe
treeswift==1.1.51
    # via alifedata-phyloinformatics-convert
typeguard==4.6.0
    # via pandera
typing-extensions==4.16.0
    # via
    #   hstrat (../../pyproject.toml)
    #   alifedata-phyloinformatics-convert
    #   exceptiongroup
    #   formulaic
    #   multidict
    #   mypy
    #   pandera
    #   phyloframe
    #   pydantic
    #   pydantic-core
    #   teeplot
    #   typeguard
    #   typing-inspect
    #   typing-inspection
    #   virtualenv
typing-inspect==0.9.0
    # via pandera
typing-inspection==0.4.4
    # via pydantic
tzdata==2026.5
    # via pandas
validators==0.35.0
    # via alifedata-phyloinformatics-convert
virtualenv==21.14.7
    # via tox
wcwidth==0.9.2
    # via prettytable
wrapt==2.5.1
    # via
    #   deprecated
    #   formulaic
yarl==1.25.1
    # via alifedata-phyloinformatics-convert
