.gitignore
.pre-commit-config.yaml
.readthedocs.yml
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.md
MANIFEST.in
Makefile
README.md
pyproject.toml
uv.lock
.devcontainer/devcontainer.json
.devcontainer/postCreateCommand.sh
.github/CODEOWNERS
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/release-drafter.yml
.github/ISSUE_TEMPLATE/bug_report.yml
.github/ISSUE_TEMPLATE/documentation_request.yml
.github/ISSUE_TEMPLATE/feature_request.yml
.github/ISSUE_TEMPLATE/general_questions.yml
.github/actions/setup-env/action.yaml
.github/workflows/docs-build.yml
.github/workflows/integration-test.yml
.github/workflows/pypi-release.yml
.github/workflows/release-drafter.yml
pycytominer/__about__.py
pycytominer/__config__.py
pycytominer/__init__.py
pycytominer/aggregate.py
pycytominer/annotate.py
pycytominer/cli.py
pycytominer/consensus.py
pycytominer/feature_select.py
pycytominer/normalize.py
pycytominer.egg-info/PKG-INFO
pycytominer.egg-info/SOURCES.txt
pycytominer.egg-info/dependency_links.txt
pycytominer.egg-info/entry_points.txt
pycytominer.egg-info/requires.txt
pycytominer.egg-info/top_level.txt
pycytominer/cyto_utils/DeepProfiler_processing.py
pycytominer/cyto_utils/__init__.py
pycytominer/cyto_utils/anndata_utils.py
pycytominer/cyto_utils/annotate_custom.py
pycytominer/cyto_utils/blocklist.py
pycytominer/cyto_utils/cell_locations.py
pycytominer/cyto_utils/cell_locations_cmd.py
pycytominer/cyto_utils/cells.py
pycytominer/cyto_utils/collate.py
pycytominer/cyto_utils/collate_cmd.py
pycytominer/cyto_utils/cp_image_features.py
pycytominer/cyto_utils/features.py
pycytominer/cyto_utils/load.py
pycytominer/cyto_utils/modz.py
pycytominer/cyto_utils/output.py
pycytominer/cyto_utils/single_cell_ingest_utils.py
pycytominer/cyto_utils/util.py
pycytominer/cyto_utils/write_gct.py
pycytominer/cyto_utils/database_config/ingest_config.ini
pycytominer/data/blocklist_features.txt
pycytominer/data/default_blocklists.yaml
pycytominer/data/metadata_feature_dictionary.txt
pycytominer/operations/__init__.py
pycytominer/operations/correlation_threshold.py
pycytominer/operations/get_na_columns.py
pycytominer/operations/noise_removal.py
pycytominer/operations/transform.py
pycytominer/operations/variance_threshold.py