CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
HISTORY.md
LICENSE
MANIFEST.in
README.md
RELEASING.md
pyproject.toml
src/spatioloji_s/__init__.py
src/spatioloji_s/__main__.py
src/spatioloji_s/cli.py
src/spatioloji_s/py.typed
src/spatioloji_s/utils.py
src/spatioloji_s.egg-info/PKG-INFO
src/spatioloji_s.egg-info/SOURCES.txt
src/spatioloji_s.egg-info/dependency_links.txt
src/spatioloji_s.egg-info/entry_points.txt
src/spatioloji_s.egg-info/requires.txt
src/spatioloji_s.egg-info/top_level.txt
src/spatioloji_s/ccc/__init__.py
src/spatioloji_s/ccc/database.py
src/spatioloji_s/ccc/halo.py
src/spatioloji_s/ccc/run.py
src/spatioloji_s/ccc/scoring.py
src/spatioloji_s/ccc/zones.py
src/spatioloji_s/data/__init__.py
src/spatioloji_s/data/config.py
src/spatioloji_s/data/core.py
src/spatioloji_s/data/expression.py
src/spatioloji_s/data/images.py
src/spatioloji_s/data/qc.py
src/spatioloji_s/data/utils.py
src/spatioloji_s/processing/DEG.py
src/spatioloji_s/processing/__init__.py
src/spatioloji_s/processing/_gpu.py
src/spatioloji_s/processing/annotation.py
src/spatioloji_s/processing/batch_correction.py
src/spatioloji_s/processing/clustering.py
src/spatioloji_s/processing/decoupler.py
src/spatioloji_s/processing/dimension_reduction.py
src/spatioloji_s/processing/feature_selection.py
src/spatioloji_s/processing/imputation.py
src/spatioloji_s/processing/normalization.py
src/spatioloji_s/spatial/__init__.py
src/spatioloji_s/spatial/_distance_utils.py
src/spatioloji_s/spatial/_gradient.py
src/spatioloji_s/spatial/_gradient_types.py
src/spatioloji_s/spatial/_infiltration.py
src/spatioloji_s/spatial/_infiltration_types.py
src/spatioloji_s/spatial/_interface.py
src/spatioloji_s/spatial/_interface_types.py
src/spatioloji_s/spatial/_motif_types.py
src/spatioloji_s/spatial/point/__init__.py
src/spatioloji_s/spatial/point/gradient.py
src/spatioloji_s/spatial/point/graph.py
src/spatioloji_s/spatial/point/infiltration.py
src/spatioloji_s/spatial/point/interface.py
src/spatioloji_s/spatial/point/motifs.py
src/spatioloji_s/spatial/point/neighborhoods.py
src/spatioloji_s/spatial/point/patterns.py
src/spatioloji_s/spatial/point/ripley.py
src/spatioloji_s/spatial/point/statistics.py
src/spatioloji_s/spatial/polygon/__init__.py
src/spatioloji_s/spatial/polygon/boundaries.py
src/spatioloji_s/spatial/polygon/gradient.py
src/spatioloji_s/spatial/polygon/graph.py
src/spatioloji_s/spatial/polygon/infiltration.py
src/spatioloji_s/spatial/polygon/interface.py
src/spatioloji_s/spatial/polygon/morphology.py
src/spatioloji_s/spatial/polygon/motifs.py
src/spatioloji_s/spatial/polygon/neighborhoods.py
src/spatioloji_s/spatial/polygon/patterns.py
src/spatioloji_s/spatial/polygon/statistics.py
src/spatioloji_s/visualization/__init__.py
src/spatioloji_s/visualization/_spatial_helpers.py
src/spatioloji_s/visualization/basic_plots.py
src/spatioloji_s/visualization/ccc_plots.py
src/spatioloji_s/visualization/plots.py
src/spatioloji_s/visualization/point_plots.py
src/spatioloji_s/visualization/polygon_plots.py
tests/__init__.py
tests/conftest.py
tests/test_spatioloji_s.py
tests/unit/__init__.py
tests/unit/test_annotation.py
tests/unit/test_ccc_analytical_test_equivalence.py
tests/unit/test_ccc_autocrine.py
tests/unit/test_ccc_halo.py
tests/unit/test_ccc_permutation_equivalence.py
tests/unit/test_ccc_run.py
tests/unit/test_ccc_scoring.py
tests/unit/test_ccc_zones.py
tests/unit/test_decoupler.py
tests/unit/test_deg.py
tests/unit/test_deg_concordance.py
tests/unit/test_distance_utils.py
tests/unit/test_gpu_dispatch.py
tests/unit/test_gradient.py
tests/unit/test_infiltration.py
tests/unit/test_interface.py
tests/unit/test_morphology_new.py
tests/unit/test_motifs.py
tests/unit/test_neighbors_concordance.py
tests/unit/test_pca_hvg_concordance.py
tests/unit/test_plot_show_semantics.py
tests/unit/test_proximity_contact.py
tests/unit/test_scale_concordance.py
tests/unit/test_weighted_knn.py
tests/unit/test_xenium_zarr.py