.nextflow
.nextflow.log*
results
work
data/model_weights/*
!data/model_weights/README.md
trace.txt
scratch
cache/.shared/*
!cache/README.md
cache/.home/*
!cache/.home/README.md
screenshot
# Python bytecode/cache
__pycache__/
*.py[cod]
*$py.class

# scfoundry: server-specific config (generated by `scfoundry init`) and per-run directories
nextflow.config
runs/
.scfoundry.json
dist/
build/
*.egg-info/
# internal design notes (kept out of the public history)
docs/
