click<8.2.0
dm-tree
einops
esm==3.1.6
hydra-core
levenshtein
lightning==2.5.0.post0
loguru>=0.7.3
ml-collections>=1.0.0
numpy==1.26.4
omegaconf>=2.3.0
openmm>=8.2.0
pandas==2.2.3
pdbfixer
pyparsing>=3.2.3
python-box>=7.3.2
s3fs==2025.2.0
scipy==1.10.1
sentencepiece
torch==2.5.1
tqdm
transformers
typer>=0.15.2
wandb==0.19.8

[analysis]
matplotlib>=3.10.1
py3dmol>=2.4.2
seaborn>=0.13.2
