.gitignore
Dockerfile
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/scripts/next_version.py
.github/workflows/docker-publish.yml
.github/workflows/documentation.yml
.github/workflows/publish-pypi.yml
.github/workflows/release.yml
.github/workflows/tests.yml
documentation/Makefile
documentation/advanced.md
documentation/api_reference.rst
documentation/chromatic-shift-after.png
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documentation/chromatic-shift.md
documentation/cli.md
documentation/conf.py
documentation/contributing.md
documentation/index.md
documentation/installation.md
documentation/instructions_for_gif.txt
documentation/make.bat
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documentation/mosaic.md
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examples/00_installation_and_mental_model.ipynb
examples/01_read_microscope_datasets_templates.ipynb
examples/02_array_manager_from_numpy_dask.ipynb
examples/03_create_ome_zarr_with_metadata.ipynb
examples/04_read_zarr_inspect_groups_labels.ipynb
examples/05_add_groups_and_write_image_regions.ipynb
examples/06_labels_append_inside_existing_zarr.ipynb
examples/07_create_new_zarr_dataset_with_labels.ipynb
examples/08_metadata_subset_pyramid_and_channels.ipynb
examples/09_legacy_options_v04_and_troubleshooting.ipynb
examples/10_mosaic_fusion.ipynb
examples/README.md
examples/label_features_explorer.py
examples/manifest.json
examples/test_batch.csv
tests/__init__.py
tests/conftest.py
tests/test_anisotropic_downsampling.py
tests/test_channel_colors.py
tests/test_chromatic_shift.py
tests/test_cli_chromatic_shift.py
tests/test_cli_mosaic.py
tests/test_cli_shards.py
tests/test_drop_singleton.py
tests/test_evident_manager.py
tests/test_fusion_regions.py
tests/test_luxendo_mosaic.py
tests/test_manager_refactor.py
tests/test_mosaic_fields.py
tests/test_mosaic_fusion.py
tests/test_napari_compact_layout.py
tests/test_napari_explorer_widget.py
tests/test_napari_layout.py
tests/test_napari_log.py
tests/test_napari_mosaic_widget.py
tests/test_next_version.py
tests/test_opera_mosaic.py
tests/test_parallel_write.py
tests/test_shared_defaults.py
tests/test_zarr_axis_aware.py
tests/test_zarr_discovery.py
tests/test_zarr_empty_creation.py
tests/test_zarr_read_write.py
tests/test_zarr_region_write.py
tests/test_zarr_sharding.py
zarrsmith/__init__.py
zarrsmith/_version.py
zarrsmith.egg-info/PKG-INFO
zarrsmith.egg-info/SOURCES.txt
zarrsmith.egg-info/dependency_links.txt
zarrsmith.egg-info/entry_points.txt
zarrsmith.egg-info/requires.txt
zarrsmith.egg-info/scm_file_list.json
zarrsmith.egg-info/top_level.txt
zarrsmith/cli/__arguments.py
zarrsmith/cli/__init__.py
zarrsmith/cli/zarrsmith.py
zarrsmith/microscope_manager/__init__.py
zarrsmith/microscope_manager/array_manager.py
zarrsmith/microscope_manager/evident_manager.py
zarrsmith/microscope_manager/luxendo_manager.py
zarrsmith/microscope_manager/microscope_manager.py
zarrsmith/microscope_manager/opera_manager.py
zarrsmith/microscope_manager/readers.py
zarrsmith/microscope_manager/scape_manager.py
zarrsmith/microscope_manager/viventis_manager.py
zarrsmith/microscope_manager/zarr_manager.py
zarrsmith/microscope_manager/zarr_v04_manager.py
zarrsmith/microscope_manager/zeiss_manager.py
zarrsmith/mosaic_manager/__init__.py
zarrsmith/mosaic_manager/fields.py
zarrsmith/mosaic_manager/fusion.py
zarrsmith/mosaic_manager/h5_array.py
zarrsmith/mosaic_manager/luxendo_mosaic_manager.py
zarrsmith/mosaic_manager/mosaic.py
zarrsmith/mosaic_manager/opera_mosaic_manager.py
zarrsmith/mosaic_manager/readers.py
zarrsmith/mosaic_manager/tiff_array.py
zarrsmith/mosaic_manager/tile.py
zarrsmith/mosaic_manager/zeiss_mosaic_manager.py
zarrsmith/napari/__init__.py
zarrsmith/napari/_batch_csv.py
zarrsmith/napari/_convert_widget.py
zarrsmith/napari/_dataset_helpers.py
zarrsmith/napari/_explorer_widget.py
zarrsmith/napari/_export_widget.py
zarrsmith/napari/_layout.py
zarrsmith/napari/_log.py
zarrsmith/napari/_mosaic_widget.py
zarrsmith/napari/napari.yaml
zarrsmith/napari/resources/zarrsmith-icon.svg
zarrsmith/utils/__init__.py
zarrsmith/utils/axes.py
zarrsmith/utils/chromatic_shift.py
zarrsmith/utils/chunks.py
zarrsmith/utils/colors.py
zarrsmith/utils/create_empty_dataset.py
zarrsmith/utils/create_empty_group.py
zarrsmith/utils/dataset_ops.py
zarrsmith/utils/downsampling.py
zarrsmith/utils/metadata.py
zarrsmith/utils/ngff.py
zarrsmith/utils/ome.py
zarrsmith/utils/pyramid.py
zarrsmith/utils/subset.py
zarrsmith/utils/to_zarr.py
zarrsmith/utils/units.py
zarrsmith/utils/visualize.py
zarrsmith/utils/write_image_region.py
zarrsmith/utils/write_label_region.py
zarrsmith/utils/zoom.py