DAY-EC activated.
DAY-EC activated.
host:
i192mem-dy-all-1
Sat May 30 06:52:50 UTC 2026

job_processes:
    PID    PPID STAT     ELAPSED %CPU %MEM COMMAND
  34407   34406 Sl         19:08  1.6  0.0 python
  35306   34407 S          19:02  0.0  0.0 bash
  37926   35306 S          18:44  0.0  0.0 xargs
  37927   37926 S          18:44  0.0  0.0 bash
  37928   37926 S          18:44  0.0  0.0 bash
  37929   37926 S          18:44  0.0  0.0 bash
  37930   37926 S          18:44  0.0  0.0 bash
  37931   37926 S          18:44  0.0  0.0 bash
  37934   37926 S          18:44  0.0  0.0 bash
  37935   37926 S          18:44  0.0  0.0 bash
  37939   37926 S          18:44  0.0  0.0 bash
  37941   37926 S          18:44  0.0  0.0 bash
  37944   37926 S          18:44  0.0  0.0 bash
  37948   37926 S          18:44  0.0  0.0 bash
  37950   37926 S          18:44  0.0  0.0 bash
  37954   37926 S          18:44  0.0  0.0 bash
  37957   37926 S          18:44  0.0  0.0 bash
  37960   37926 S          18:44  0.0  0.0 bash
  37964   37926 S          18:44  0.0  0.0 bash
  37969   37926 S          18:44  0.0  0.0 bash
  37973   37926 S          18:44  0.0  0.0 bash
  37977   37926 S          18:44  0.0  0.0 bash
  37982   37926 S          18:44  0.0  0.0 bash
  37988   37926 S          18:44  0.0  0.0 bash
  37991   37926 S          18:44  0.0  0.0 bash
  37995   37926 S          18:44  0.0  0.0 bash
  37999   37926 S          18:44  0.0  0.0 bash
  38002   37926 S          18:44  0.0  0.0 bash
  38007   37926 S          18:44  0.0  0.0 bash
  38013   37926 S          18:44  0.0  0.0 bash
  38016   37926 S          18:44  0.0  0.0 bash
  38018   37926 S          18:44  0.0  0.0 bash
  38023   37926 S          18:44  0.0  0.0 bash
  38027   37926 S          18:44  0.0  0.0 bash
  38030   37926 S          18:44  0.0  0.0 bash
  38034   37926 S          18:44  0.0  0.0 bash
  38038   37926 S          18:44  0.0  0.0 bash
  38041   37926 S          18:44  0.0  0.0 bash
  38044   37926 S          18:44  0.0  0.0 bash
  38050   37926 S          18:44  0.0  0.0 bash
  38055   37926 S          18:44  0.0  0.0 bash
  38058   37926 S          18:44  0.0  0.0 bash
  38061   37926 S          18:44  0.0  0.0 bash
  38064   37926 S          18:44  0.0  0.0 bash
  38070   37926 S          18:44  0.0  0.0 bash
  38074   37926 S          18:44  0.0  0.0 bash
  38079   37926 S          18:44  0.0  0.0 bash
  38083   37926 S          18:44  0.0  0.0 bash
  38085   37926 S          18:44  0.0  0.0 bash
  38094   37926 S          18:44  0.0  0.0 bash
  38097   37926 S          18:44  0.0  0.0 bash
  38100   37926 S          18:44  0.0  0.0 bash
  38103   37926 S          18:44  0.0  0.0 bash
  38108   37926 S          18:44  0.0  0.0 bash
  38112   37926 S          18:44  0.0  0.0 bash
  38115   37926 S          18:44  0.0  0.0 bash
  38120   37926 S          18:44  0.0  0.0 bash
  38122   37926 S          18:44  0.0  0.0 bash
  38126   37926 S          18:44  0.0  0.0 bash
  38131   37926 S          18:44  0.0  0.0 bash
  38133   37926 S          18:44  0.0  0.0 bash
  38137   37926 S          18:44  0.0  0.0 bash
  38140   37926 S          18:44  0.0  0.0 bash
  38141   37926 S          18:44  0.0  0.0 bash
  38147   37926 S          18:44  0.0  0.0 bash
  38150   37926 S          18:44  0.0  0.0 bash
  38152   37926 S          18:44  0.0  0.0 bash
  49295   38094 I          01:24  1.4  0.0 cp
  49340   38126 I          01:18  1.1  0.0 cp
  49346   38137 I          01:18  1.2  0.0 cp
  49361   38097 I          01:16  1.3  0.0 cp
  49378   37928 I          01:15  1.2  0.0 cp
  49391   38023 I          01:13  1.2  0.0 cp
  49411   38007 I          01:12  1.3  0.0 cp
  49461   38002 I          01:08  1.4  0.0 cp
  49496   38074 I          01:04  1.4  0.0 cp
  49505   38027 I          01:02  1.4  0.0 cp
  49514   37934 I          01:02  1.3  0.0 cp
  49538   38141 I          00:58  1.4  0.0 cp
  49556   38041 I          00:57  1.5  0.0 cp
  49640   38131 I          00:47  1.0  0.0 cp
  49643   37950 I          00:46  1.9  0.0 cp
  49646   38061 I          00:46  1.1  0.0 cp
  49658   37931 I          00:45  0.8  0.0 cp
  49677   37944 I          00:43  1.7  0.0 cp
  49680   38070 I          00:43  1.8  0.0 cp
  49686   38083 I          00:42  1.9  0.0 cp
  49692   38120 I          00:41  1.4  0.0 cp
  49698   37930 I          00:41  1.8  0.0 cp
  49704   37964 I          00:39  1.9  0.0 cp
  49713   38050 I          00:29  1.6  0.0 cp
  49716   38150 I          00:29  1.6  0.0 cp
  49719   38030 I          00:28  1.3  0.0 cp
  49728   38100 I          00:27  1.2  0.0 cp
  49737   37929 I          00:26  1.6  0.0 cp
  49746   37939 I          00:25  1.6  0.0 cp
  49755   38034 I          00:25  1.6  0.0 cp
  49758   38108 I          00:24  1.5  0.0 cp
  49764   38112 I          00:24  1.8  0.0 cp
  49770   38115 D          00:23  0.8  0.0 cp
  49773   38085 I          00:23  1.7  0.0 cp
  49776   37991 D          00:22  1.6  0.0 cp
  49782   38058 I          00:22  1.6  0.0 cp
  49785   38103 I          00:21  1.3  0.0 cp
  49788   38140 I          00:21  0.2  0.0 cp
  49791   38064 I          00:20  1.5  0.0 cp
  49794   37960 I          00:20  1.3  0.0 cp
  49800   38016 I          00:16  2.0  0.0 cp
  49803   37948 I          00:15  0.6  0.0 cp
  49817   38055 I          00:13  0.1  0.0 cp
  49820   37941 D          00:12  0.2  0.0 cp
  49832   37969 I          00:11  2.2  0.0 cp
  49835   38018 D          00:11  0.1  0.0 cp
  49841   38079 I          00:10  2.5  0.0 cp
  49856   37973 I          00:09  2.2  0.0 cp
  49859   37982 I          00:09  2.0  0.0 cp
  49900   38038 I          00:06  2.3  0.0 cp
  49931   38044 I          00:06  2.8  0.0 cp
  49934   37935 I          00:06  2.6  0.0 cp
  49969   37957 I          00:04  0.0  0.0 cp
  50008   37995 I          00:02  0.0  0.0 cp
  50011   37988 I          00:02  0.0  0.0 cp
  50017   38152 I          00:02  0.0  0.0 cp
  50033   37977 I          00:02  0.0  0.0 cp
  50036   38147 I          00:02  0.0  0.0 cp
  50060   38122 I          00:01  0.0  0.0 cp
  50063   37927 I          00:01  0.0  0.0 cp
  50066   37999 I          00:01  0.0  0.0 cp
  50069   38013 I          00:01  0.0  0.0 cp
  50075   37954 I          00:00  0.0  0.0 cp
  50078   38133 I          00:00  0.0  0.0 cp

scratch_summary:
502G	/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
2344
341
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L004/C251.1/L004_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L004/C273.1/L004_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L004/C39.1/L004_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L004/C85.1/L004_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C1.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C125.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C157.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C157.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C164.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C166.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C203.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C212.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C240.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C286.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C289.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C306.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C312.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C38.1/L007_2.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/C61.1/L007_1.cbcl
1780123972.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L007/s_7_2248.filter

rsync_logs:
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
2576 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul
0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul

run_log_tail:
run_bclconvert started: 2026-05-30T06:33:47+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
staging_mode: mounted_dev_shm
scratch_root: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
scratch_dir: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306
scratch_input_basis: mounted_metadata_plus_lane_root
scratch_root_file_bytes: 4536017
scratch_intensities_file_bytes: 52032652
scratch_lane_root_disk_bytes: 92860928
scratch_input_disk_bytes: 149429597
scratch_input_apparent_bytes: 149429597
scratch_required_bytes: 1671460212
scratch_available_bytes: 9361524129792
Staging mounted BCL run directory to scratch: 2026-05-30T06:33:54+00:00
mounted_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
mounted_stage_jobs: 64
mounted_stage_cycle_dirs: 2576
mounted_stage_regular_files: 11424
Copying mounted BCL files with sharded cp: 2026-05-30T06:34:06+00:00

slurm:
             JOBID PARTITION         NAME     USER ST       TIME  NODES NODELIST(REASON)
              2660   i192mem run_bclconve   ubuntu  R      19:12      1 i192mem-dy-all-1
