GH11_epPCR_Test/
GH98_cDMS/

# Python build artifacts
__pycache__/
*.pyc
*.pyo
*.egg-info/
*.egg
build/
dist/
*.whl
*.tar.gz

# Virtual environments
venv/
env/
ENV/
env.bak/
venv.bak/
test_venv/

# Temporary files
*.log
*.pdf
.DS_Store

# Test files
test_*
*_test*
*_temp*

# Agent files
CLAUDE.md
AGENTS.md

# Output directories
UMIclusterfull_*
consensus_results/
variant_results/

# Sample data
a_small_morsel/
