joblib>=1.5.1
lightgbm>=4.5.0
metapyrodigal>=1.4.1
numba<0.62,>=0.61.2
numpy<2.3,>=1.24
pandas<3,>=2.3.0
polars-u64-idx<2,>=1.30.0
ptn-set-transformer<3,>=2.8
psutil>=7.0.0
pyarrow>=20.0.0
pyfastatools==2.5.0
pyhmmer<0.13,>=0.11.1
pyrodigal<4,>=3.5.2
pyrodigal-gv<0.4,>=0.3.2
pyyaml>=6.0
requests>=2.32
scikit-learn==1.7.2
snakemake==8.23.2
tqdm>=4.67.1
