.gitignore
.readthedocs.yaml
CHANGELOG.txt
LICENSE
README.md
check_typing_linting_and_formatting.py
conftest.py
pyproject.toml
setup.py
.github/workflows/all_checks.yml
.github/workflows/build_wheels_and_upload_to_pypi.yml
docs/Makefile
docs/api_reference.rst
docs/cheatsheet.rst
docs/conf.py
docs/developer_guide.rst
docs/extension_orfs.rst
docs/extension_seqs.rst
docs/extension_stats.rst
docs/how_to_columns.rst
docs/how_to_create.rst
docs/how_to_genomic_ops.rst
docs/how_to_inspect.rst
docs/how_to_map.rst
docs/how_to_overlap.rst
docs/how_to_pages.rst
docs/how_to_rows.rst
docs/how_to_sequences.rst
docs/how_to_write.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/migration_cheatsheet.tsv
docs/migration_guide.rst
docs/pyranger_cli.rst
docs/pyranges_extensions.rst
docs/pyranges_module.rst
docs/pyranges_objects.rst
docs/range_frame.rst
docs/requirements.txt
docs/tutorial.rst
docs/_static/custom.css
docs/_templates/custom_method_summary.rst
pyranges1/__init__.py
pyranges1/_ruranges.py
pyranges1/cli.py
pyranges1/docs
pyranges1/orfs.py
pyranges1/readers.py
pyranges1/seqs.py
pyranges1/stats.py
pyranges1.egg-info/PKG-INFO
pyranges1.egg-info/SOURCES.txt
pyranges1.egg-info/dependency_links.txt
pyranges1.egg-info/entry_points.txt
pyranges1.egg-info/requires.txt
pyranges1.egg-info/top_level.txt
pyranges1/core/__init__.py
pyranges1/core/assistant.py
pyranges1/core/empty.py
pyranges1/core/example_data.py
pyranges1/core/loci_getter.py
pyranges1/core/multioverlap.py
pyranges1/core/names.py
pyranges1/core/options.py
pyranges1/core/out.py
pyranges1/core/pyranges_groupby.py
pyranges1/core/pyranges_helpers.py
pyranges1/core/pyranges_main.py
pyranges1/core/random.py
pyranges1/core/tostring.py
pyranges1/core/version.py
pyranges1/data/__init__.py
pyranges1/data/aorta.bed
pyranges1/data/aorta2.bed
pyranges1/data/bigwig.bw
pyranges1/data/chipseq.bed
pyranges1/data/chipseq_background.bed
pyranges1/data/chromsizes.bed
pyranges1/data/cpg.bed
pyranges1/data/ensembl.gtf
pyranges1/data/ensembl_human.gtf.gz
pyranges1/data/exons.bed
pyranges1/data/f1.bed
pyranges1/data/f2.bed
pyranges1/data/gencode_human.gtf.gz
pyranges1/data/lamina.bed
pyranges1/data/ncbi.fasta
pyranges1/data/ncbi.fasta.fai
pyranges1/data/ncbi.gff.gz
pyranges1/data/smaller.bam
pyranges1/data/ucsc_human.bed.gz
pyranges1/ext/__init__.py
pyranges1/ext/orfs.py
pyranges1/ext/seqs.py
pyranges1/ext/stats.py
pyranges1/methods/__init__.py
pyranges1/methods/boundaries.py
pyranges1/methods/combine_positions.py
pyranges1/methods/complement.py
pyranges1/methods/complement_overlaps.py
pyranges1/methods/concat.py
pyranges1/methods/export_docs.py
pyranges1/methods/interval_metrics.py
pyranges1/methods/itergrs.py
pyranges1/methods/join.py
pyranges1/methods/map_to_global.py
pyranges1/methods/map_to_local.py
pyranges1/methods/merge.py
pyranges1/methods/merge_cluster.py
pyranges1/methods/overlap.py
pyranges1/methods/slice_ranges.py
pyranges1/methods/sort.py
pyranges1/methods/split.py
pyranges1/methods/statistics.py
pyranges1/methods/summary.py
pyranges1/methods/tile_genome.py
pyranges1/methods/to_rle.py
pyranges1/range_frame/__init__.py
pyranges1/range_frame/range_frame.py
pyranges1/range_frame/range_frame_validator.py
tests/helpers.py
tests/run_doctest_tutorial_howto.py
tests/test_parallelism.py
tests/unit/__init__.py
tests/unit/chip_10.bed
tests/unit/conftest.py
tests/unit/f1.bed
tests/unit/f2.bed
tests/unit/hi
tests/unit/k_nearest.py
tests/unit/statistics.py
tests/unit/test_concat.py
tests/unit/test_count_overlaps.py
tests/unit/test_guessers.py
tests/unit/test_join.py
tests/unit/test_pandas_overrides.py
tests/unit/test_ruranges_dtypes.py
tests/unit/test_tostring.py
tests/unit/cumsum/test_cumsum.py
tests/unit/getitem/test_getitem.py
tests/unit/mapping/test_map.py
tests/unit/new_position/test_new_position.py
tests/unit/out/test_out.py
tests/unit/spliced_subsequence/test_spliced_subsequence.py
tests/unit/test_data/ensembl.gtf
tests/unit/test_data/test_sorted.bam
tests/unit/test_data/test_sorted.bam.bai
tests/unit/unit/__init__.py
tests/unit/unit/datatypes/unary.py