LICENSE
README.md
pyproject.toml
crstlmeth/__init__.py
crstlmeth.egg-info/PKG-INFO
crstlmeth.egg-info/SOURCES.txt
crstlmeth.egg-info/dependency_links.txt
crstlmeth.egg-info/entry_points.txt
crstlmeth.egg-info/requires.txt
crstlmeth.egg-info/top_level.txt
crstlmeth/cli/__init__.py
crstlmeth/cli/calculate/__init__.py
crstlmeth/cli/calculate/devi_calc_cmd.py
crstlmeth/cli/calculate/meth_calc_cmd.py
crstlmeth/cli/plot/__init__.py
crstlmeth/cli/plot/cn_plot_cmd.py
crstlmeth/cli/plot/cpg_profile_cmd.py
crstlmeth/cli/plot/meth_plot_cmd.py
crstlmeth/cli/reference/__init__.py
crstlmeth/cli/reference/create_reference_cmd.py
crstlmeth/cli/reference/estimate_reference_cmd.py
crstlmeth/cli/reference/validate_reference_cmd.py
crstlmeth/cli/reference/view_reference_cmd.py
crstlmeth/config/__init__.py
crstlmeth/config/schema.py
crstlmeth/config/settings.py
crstlmeth/core/__init__.py
crstlmeth/core/cmeth.py
crstlmeth/core/copynumber.py
crstlmeth/core/cpg_profile.py
crstlmeth/core/discovery.py
crstlmeth/core/logging.py
crstlmeth/core/methylation.py
crstlmeth/core/parsers.py
crstlmeth/core/references.py
crstlmeth/core/regions.py
crstlmeth/core/samples.py
crstlmeth/core/stats.py
crstlmeth/kits/dmr.bed
crstlmeth/kits/mlpa.bed
crstlmeth/viz/__init__.py
crstlmeth/viz/cn_plot.py
crstlmeth/viz/cpg_profile.py
crstlmeth/viz/meth_plot.py
crstlmeth/viz/style.py
crstlmeth/web/__init__.py
crstlmeth/web/__main__.py
crstlmeth/web/app.py
crstlmeth/web/sidebar.py
crstlmeth/web/state.py
crstlmeth/web/utils.py
crstlmeth/web/assets/logo.svg
crstlmeth/web/pages/00_home.py
crstlmeth/web/pages/01_analyze.py
crstlmeth/web/pages/02_references.py
crstlmeth/web/pages/03_calculate.py
crstlmeth/web/pages/04_kits.py
crstlmeth/web/pages/90_log.py
crstlmeth/web/pages/99_faq.py