LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
src/harpy/__init__.py
src/harpy/napari.yaml
src/harpy/pipeline.py
src/harpy/single.py
src/harpy/_tests/__init__.py
src/harpy/_tests/conftest.py
src/harpy/_tests/test_notebooks.py
src/harpy/_tests/test_pipeline.py
src/harpy/_tests/test_widget.py
src/harpy/configs/__init__.py
src/harpy/configs/pipeline.yaml
src/harpy/datasets/__init__.py
src/harpy/datasets/cluster_blobs.py
src/harpy/datasets/pixie_example.py
src/harpy/datasets/proteomics.py
src/harpy/datasets/registry.py
src/harpy/datasets/transcriptomics.py
src/harpy/image/__init__.py
src/harpy/image/_combine.py
src/harpy/image/_contrast.py
src/harpy/image/_filters.py
src/harpy/image/_image.py
src/harpy/image/_manager.py
src/harpy/image/_map.py
src/harpy/image/_normalize.py
src/harpy/image/_rasterize.py
src/harpy/image/_tiling.py
src/harpy/image/_transcripts.py
src/harpy/image/pixel_clustering/__init__.py
src/harpy/image/pixel_clustering/_clustering.py
src/harpy/image/pixel_clustering/_preprocess.py
src/harpy/image/segmentation/__init__.py
src/harpy/image/segmentation/_align_masks.py
src/harpy/image/segmentation/_expand_masks.py
src/harpy/image/segmentation/_filter_masks.py
src/harpy/image/segmentation/_grid.py
src/harpy/image/segmentation/_map.py
src/harpy/image/segmentation/_merge_masks.py
src/harpy/image/segmentation/_segmentation.py
src/harpy/image/segmentation/_utils.py
src/harpy/image/segmentation/segmentation_models/__init__.py
src/harpy/image/segmentation/segmentation_models/_baysor.py
src/harpy/image/segmentation/segmentation_models/_cellpose.py
src/harpy/image/segmentation/segmentation_models/_instanseg.py
src/harpy/image/segmentation/segmentation_models/_mesmer.py
src/harpy/image/segmentation/segmentation_models/_watershed.py
src/harpy/io/__init__.py
src/harpy/io/_merscope.py
src/harpy/io/_spatial_data.py
src/harpy/io/_transcripts.py
src/harpy/io/_visium_hd.py
src/harpy/io/_xenium.py
src/harpy/plot/__init__.py
src/harpy/plot/_annotation.py
src/harpy/plot/_cluster_cleanliness.py
src/harpy/plot/_clustering.py
src/harpy/plot/_enrichment.py
src/harpy/plot/_plot.py
src/harpy/plot/_preprocess.py
src/harpy/plot/_qc_cells.py
src/harpy/plot/_qc_image.py
src/harpy/plot/_qc_segmentation.py
src/harpy/plot/_sanity.py
src/harpy/plot/_segmentation.py
src/harpy/plot/_tiling_correction.py
src/harpy/plot/_transcripts.py
src/harpy/points/__init__.py
src/harpy/points/_points.py
src/harpy/shape/__init__.py
src/harpy/shape/_cell_expansion.py
src/harpy/shape/_manager.py
src/harpy/shape/_shape.py
src/harpy/table/__init__.py
src/harpy/table/_allocation.py
src/harpy/table/_allocation_intensity.py
src/harpy/table/_annotation.py
src/harpy/table/_clustering.py
src/harpy/table/_enrichment.py
src/harpy/table/_manager.py
src/harpy/table/_preprocess.py
src/harpy/table/_regionprops.py
src/harpy/table/_table.py
src/harpy/table/cell_clustering/__init__.py
src/harpy/table/cell_clustering/_clustering.py
src/harpy/table/cell_clustering/_preprocess.py
src/harpy/table/cell_clustering/_utils.py
src/harpy/table/cell_clustering/_weighted_channel_expression.py
src/harpy/table/pixel_clustering/__init__.py
src/harpy/table/pixel_clustering/_cluster_intensity.py
src/harpy/utils/__init__.py
src/harpy/utils/_aggregate.py
src/harpy/utils/_flowsom.py
src/harpy/utils/_io.py
src/harpy/utils/_keys.py
src/harpy/utils/_query.py
src/harpy/utils/_transformations.py
src/harpy/utils/pylogger.py
src/harpy/utils/utils.py
src/harpy/widgets/__init__.py
src/harpy/widgets/_allocate_widget.py
src/harpy/widgets/_annotate_widget.py
src/harpy/widgets/_clean_widget.py
src/harpy/widgets/_load_widget.py
src/harpy/widgets/_segment_widget.py
src/harpy/widgets/_wizard_widget.py
src/harpy_analysis.egg-info/PKG-INFO
src/harpy_analysis.egg-info/SOURCES.txt
src/harpy_analysis.egg-info/dependency_links.txt
src/harpy_analysis.egg-info/entry_points.txt
src/harpy_analysis.egg-info/requires.txt
src/harpy_analysis.egg-info/top_level.txt