# Core dependencies (always installed)
# Bioinformatics
biopython>=1.79
pysam>=0.19.0

# Numerical / data
numpy>=1.21.0
scipy>=1.9.0
pandas>=1.3.0

# Graph processing
networkx>=2.6.0

# Hi-C / Phasing
scikit-learn>=1.3.0

# CLI / IO
click>=8.0.0
pyyaml>=6.0
tqdm>=4.62.0
h5py>=3.5.0

# Performance
numba>=0.54.0
joblib>=1.1.0
