numpy>=2.4.2
biopython>=1.86
pandas>=2.3.3
matplotlib>=3.10.8
scikit-learn>=1.8.0
scipy>=1.17.0
typing-extensions>=4.15.0
requests>=2.32.5
unidecode>=1.4.0
xmltodict>=0.14.2
seaborn
psutil

[aleph]
future
termcolor
igraph

[conda]
foldseek
pymol-open-source
clustalw
mmseqs2

[db]
plinder

[ml]
torch
torchvision
transformers
tensorboard
