.dockerignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
docker/README.md
docker/compose.yaml
docker/constraints.txt
docker/import_guard/sitecustomize.py
docker/python/Dockerfile
docker/python/install_mpich_compat.sh
docker/pytomography/Dockerfile
docker/sirf/Dockerfile
docker/stir/Dockerfile
docs/api.rst
docs/backends.rst
docs/changelog.rst
docs/conf.py
docs/connector_modernization_plan.rst
docs/contributing.rst
docs/examples.rst
docs/geometry.rst
docs/index.rst
docs/installation.rst
docs/intro.rst
docs/testing.rst
docs/usage.rst
docs/_static/.gitkeep
docs/examples/01_basic_simulation.py
docs/examples/02_runtime_switch_comparison.py
docs/examples/03_multi_window.py
docs/examples/04_custom_config.py
docs/examples/05_scattwin_vs_penetrate_comparison.py
docs/examples/06_schneider_density_conversion.py
docs/examples/07A_stir_adaptor_osem.py
docs/examples/07B_sirf_adaptor_osem.py
docs/examples/07C_pytomography_adaptor_osem.py
docs/examples/08A_stir_adaptor_from_dicom.py
docs/examples/08B_sirf_adaptor_from_dicom.py
docs/examples/08C_pytomography_adaptor_from_dicom.py
docs/examples/_python_connector_helpers.py
examples/01_basic_simulation.py
examples/02_runtime_switch_comparison.py
examples/03_multi_window.py
examples/04_custom_config.py
examples/05_scattwin_vs_penetrate_comparison.py
examples/06_schneider_density_conversion.py
examples/07A_stir_adaptor_osem.py
examples/07B_sirf_adaptor_osem.py
examples/07C_pytomography_adaptor_osem.py
examples/08A_stir_adaptor_from_dicom.py
examples/08B_sirf_adaptor_from_dicom.py
examples/08C_pytomography_adaptor_from_dicom.py
examples/_python_connector_helpers.py
examples/run_all_examples.sh
scripts/fix.sh
scripts/release.sh
scripts/run_all_examples.py
scripts/run_container_examples.sh
scripts/run_container_validation.sh
simind_python_connector/__init__.py
simind_python_connector.egg-info/PKG-INFO
simind_python_connector.egg-info/SOURCES.txt
simind_python_connector.egg-info/dependency_links.txt
simind_python_connector.egg-info/requires.txt
simind_python_connector.egg-info/top_level.txt
simind_python_connector/backends/__init__.py
simind_python_connector/backends/base.py
simind_python_connector/backends/sirf_backend.py
simind_python_connector/backends/stir_backend.py
simind_python_connector/builders/__init__.py
simind_python_connector/builders/acquisition_builder.py
simind_python_connector/builders/image_builder.py
simind_python_connector/configs/AnyScan.yaml
simind_python_connector/configs/Discovery670.yaml
simind_python_connector/configs/Example.yaml
simind_python_connector/configs/MLD001_SCAN0.yaml
simind_python_connector/configs/__init__.py
simind_python_connector/configs/input.smc
simind_python_connector/connectors/__init__.py
simind_python_connector/connectors/_spacing.py
simind_python_connector/connectors/base.py
simind_python_connector/connectors/python_connector.py
simind_python_connector/connectors/pytomography_adaptor.py
simind_python_connector/connectors/sirf_adaptor.py
simind_python_connector/connectors/stir_adaptor.py
simind_python_connector/converters/__init__.py
simind_python_connector/converters/attenuation.py
simind_python_connector/converters/dicom_to_stir.py
simind_python_connector/converters/simind_to_stir.py
simind_python_connector/core/__init__.py
simind_python_connector/core/config.py
simind_python_connector/core/executor.py
simind_python_connector/core/types.py
simind_python_connector/data/Schneider2000.json
simind_python_connector/data/__init__.py
simind_python_connector/data/bone.atn
simind_python_connector/data/h2o.atn
simind_python_connector/utils/__init__.py
simind_python_connector/utils/backend_access.py
simind_python_connector/utils/geometry_phantom.py
simind_python_connector/utils/import_helpers.py
simind_python_connector/utils/interfile_numpy.py
simind_python_connector/utils/interfile_parser.py
simind_python_connector/utils/io_utils.py
simind_python_connector/utils/simind_utils.py
simind_python_connector/utils/sirf_stir_utils.py
simind_python_connector/utils/stir_utils.py
tests/__init__.py
tests/conftest.py
tests/test_acquisition_builder_unit.py
tests/test_adaptor_release_simind.py
tests/test_anisotropic_voxels_simind.py
tests/test_arithmetic_operations.py
tests/test_attenuation_utils.py
tests/test_backends.py
tests/test_connector_backend_separation.py
tests/test_container_library_isolation.py
tests/test_container_scripts.py
tests/test_dicom_builder.py
tests/test_energy_window_filename_simind.py
tests/test_executor.py
tests/test_image_builder_unit.py
tests/test_integration.py
tests/test_interfile_numpy.py
tests/test_interfile_parser.py
tests/test_native_adaptors.py
tests/test_native_geometry_real.py
tests/test_non_square_slices_simind.py
tests/test_packaging_resources.py
tests/test_patch_release_simind.py
tests/test_python_connector.py
tests/test_pytomography_adaptor.py
tests/test_schneider_density.py
tests/test_simind_to_stir_converter.py
tests/test_simulation_config.py
tests/test_single_window_simind.py
tests/test_sirf_stir_utils.py
tests/test_stir_backend_arithmetic.py
tests/test_stir_utils_backend_choice_unit.py
tests/test_utils.py
tests/test_utils_small.py
tests/fixtures/minimal_variable_sections.smc