rule make_directories:
	output:
		directory("00_logs/"),
		directory("01_raw_data/"),
		directory("02_fastqc_analysis/"),
		directory("03_sam_files/"),
		directory("04_bam_files/"),
		directory("05_bigwig_files/"),
		directory("06_PEAKCALLER_peaks/")
	shell:
		"mkdir 00_logs 01_raw_data 02_fastqc_analysis 03_sam_files 04_bam_files "
		"05_bigwig_files 06_PEAKCALLER_peaks"
