rule all:
	input:
		expand("02_fastqc_analysis/{sample}_fastqc.zip", sample=samples),
		expand("02_fastqc_analysis/{sample}_fastqc.html", sample=samples),
		expand("02_fastqc_analysis/{sample}_fastqc.zip", sample=controls),
		expand("02_fastqc_analysis/{sample}_fastqc.html", sample=controls),
		expand("02_fastqc_analysis/{sample}.sorted.dedup_fastqc.zip", sample=samples),
		expand("02_fastqc_analysis/{sample}.sorted.dedup_fastqc.html", sample=samples),
		expand("02_fastqc_analysis/{sample}.sorted.dedup_fastqc.zip", sample=controls),
		expand("02_fastqc_analysis/{sample}.sorted.dedup_fastqc.html", sample=controls),
