numpy>=1.21.0
pandas>=1.3.0
pysam>=0.18.0
rich-click>=1.5.0
torch>=1.11.0
loguru>=0.6.0
scikit-learn>=1.0.0
tqdm>=4.62.0
psutil>=5.8.0
leidenalg>=0.9.0
igraph>=0.10.0
biopython>=1.80
einops>=0.6.0
transformers>=4.30.0

[dev]
pytest>=7.0.0
pytest-cov>=3.0.0
black>=22.0.0
isort>=5.10.0
flake8>=4.0.0

[plotting]
matplotlib>=3.5.0
umap-learn>=0.5.0
