msmu._utils.fasta
map_fasta
map_fasta(mdata, modality, categories=['Protein ID', 'Gene', 'Description', 'Organism'])
Map protein groups to gene names using a FASTA metadata DataFrame.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
mdata
|
MuData
|
MuData object containing the modality to map. |
required |
modality
|
str
|
The modality in the MuData object to map. |
required |
categories
|
list[str]
|
List of categories to map from fasta metadata. |
['Protein ID', 'Gene', 'Description', 'Organism']
|
Returns:
| Type | Description |
|---|---|
MuData
|
md.MuData: MuData object with updated modality var. |