`msmu._utils.protein`

select_repr_protein

select_repr_protein(mdata, modality)

Select canonical protein from protein list based on priority. canonical > swissprot > trembl > contam

Parameters:

Name	Type	Description	Default
`mdata`	`MuData`	MuData object with protein groups inferred	required
`modality`	`str`	Modality name for protein data	required

Returns:

Name	Type	Description
`mdata`	`MuData`	MuData object with representative proteins selected

select_representative(protein_group, protein_info)

Select canonical protein from protein list based on priority. canonical > swissprot > trembl > contam

Parameters:

Name	Type	Description	Default
`protein_list`	`list[str]`	list of proteins (uniprot entry)	required
`protein_info`	`DataFrame`	DataFrame of protein info from mdata.uns['protein_info']	required

Returns:

Name	Type	Description
`protein_group`	`str`	canonical protein group