torch>=2.1
pyro-ppl>=1.9
numpy>=1.24
pandas>=2.0
scipy>=1.10
scikit-learn>=1.3
anndata>=0.10
scanpy>=1.10
statsmodels>=0.14
matplotlib>=3.7
seaborn>=0.13
networkx>=3.0
dcor>=0.6
tqdm>=4.65

[all]
azizilab-sherlock[benchmarks,test,tutorials]

[benchmarks]
scvi-tools>=1.1
cell-gears>=0.1.2

[docs]
sphinx<8,>=7
furo
nbsphinx
sphinx-copybutton
ipython

[test]
pytest

[tutorials]
leidenalg>=0.10
umap-learn>=0.5
gseapy>=1.1
jupyterlab
ipykernel
