LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.py
biokit/__init__.py
biokit/__main__.py
biokit/biokit.py
biokit/version.py
biokit/adapters/NexteraPE-PE.txt
biokit/adapters/TruSeq2-PE.txt
biokit/adapters/TruSeq2-SE.txt
biokit/adapters/TruSeq3-PE-2.txt
biokit/adapters/TruSeq3-PE.txt
biokit/adapters/TruSeq3-SE.txt
biokit/helpers/__init__.py
biokit/helpers/calculate_character_frequencies.py
biokit/helpers/files.py
biokit/recoding_tables/Dayhoff-12.txt
biokit/recoding_tables/Dayhoff-15.txt
biokit/recoding_tables/Dayhoff-18.txt
biokit/recoding_tables/Dayhoff-6.txt
biokit/recoding_tables/Dayhoff-9.txt
biokit/recoding_tables/KGB-6.txt
biokit/recoding_tables/RY-nucleotide.txt
biokit/recoding_tables/S_and_R-6.txt
biokit/services/__init__.py
biokit/services/base.py
biokit/services/alignment/__init__.py
biokit/services/alignment/alignment_length.py
biokit/services/alignment/alignment_recoding.py
biokit/services/alignment/alignment_summary.py
biokit/services/alignment/base.py
biokit/services/alignment/consensus_sequence.py
biokit/services/alignment/constant_sites.py
biokit/services/alignment/parsimony_informative_sites.py
biokit/services/alignment/position_specific_score_matrix.py
biokit/services/alignment/variable_sites.py
biokit/services/coding_sequences/__init__.py
biokit/services/coding_sequences/base.py
biokit/services/coding_sequences/gc_content_first_position.py
biokit/services/coding_sequences/gc_content_four_fold_degenerate_sites.py
biokit/services/coding_sequences/gc_content_second_position.py
biokit/services/coding_sequences/gc_content_third_position.py
biokit/services/coding_sequences/gene_wise_relative_synonymous_codon_usage.py
biokit/services/coding_sequences/relative_synonymous_codon_usage.py
biokit/services/coding_sequences/translate_sequence.py
biokit/services/fastq/__init__.py
biokit/services/fastq/base.py
biokit/services/fastq/fastq_read_lengths.py
biokit/services/fastq/fastq_to_fasta.py
biokit/services/fastq/subset_pe_fastq_reads.py
biokit/services/fastq/subset_se_fastq_reads.py
biokit/services/fastq/trim_pe_adapters_fastq.py
biokit/services/fastq/trim_pe_fastq.py
biokit/services/fastq/trim_se_adapters_fastq.py
biokit/services/fastq/trim_se_fastq.py
biokit/services/genome/__init__.py
biokit/services/genome/assembly_curve.py
biokit/services/genome/base.py
biokit/services/genome/gc_content.py
biokit/services/genome/genome_assembly_metrics.py
biokit/services/genome/l50.py
biokit/services/genome/l90.py
biokit/services/genome/longest_scaffold.py
biokit/services/genome/n50.py
biokit/services/genome/n90.py
biokit/services/genome/number_of_large_scaffolds.py
biokit/services/genome/number_of_scaffolds.py
biokit/services/genome/sum_of_scaffold_lengths.py
biokit/services/text/__init__.py
biokit/services/text/base.py
biokit/services/text/character_frequency.py
biokit/services/text/faidx.py
biokit/services/text/fasta_deduplication.py
biokit/services/text/file_format_converter.py
biokit/services/text/genbank_to_fasta.py
biokit/services/text/homopolymer_runs.py
biokit/services/text/kmer_frequency.py
biokit/services/text/melting_temperature.py
biokit/services/text/multiple_line_to_single_line_fasta.py
biokit/services/text/protein_charge.py
biokit/services/text/remove_fasta_entry.py
biokit/services/text/remove_short_sequences.py
biokit/services/text/rename_fasta_entries.py
biokit/services/text/reorder_by_sequence_length.py
biokit/services/text/restriction_sites.py
biokit/services/text/sequence_complement.py
biokit/services/text/sequence_length.py
biokit/services/text/shuffle_sequences.py
biokit/services/text/single_line_to_multiple_line_fasta.py
biokit/tables/CUG_ala_code.txt
biokit/tables/alternative_flatworm_mitochondrial_code.txt
biokit/tables/alternative_yeast_nuclear_code.txt
biokit/tables/ascidian_mitochondrial_code.txt
biokit/tables/ascii_base_33.txt
biokit/tables/bacterial_archaeal_and_plant_plastid_code.txt
biokit/tables/blastocrithidia_nuclear_code.txt
biokit/tables/candidate_division_sr1_and_gracilibacteria_code.txt
biokit/tables/cephalodiscidae_mitochondrial_UAA_tyr_code.txt
biokit/tables/chlorophycean_mitochondrial_code.txt
biokit/tables/ciliate_dasycladacean_and_hexamita_nuclear_code.txt
biokit/tables/condylostoma_nuclear_code.txt
biokit/tables/echinoderm_and_flatworm_mitochondrial_code.txt
biokit/tables/euplotid_nuclear_code.txt
biokit/tables/invertebrate_mitochondrial_code.txt
biokit/tables/karyorelict_nuclear_code.txt
biokit/tables/mesodinium_nuclear_code.txt
biokit/tables/mold_protozoan_and_coelenterate_mitochondrial_code_and_the_mycoplasma_spiroplasma.txt
biokit/tables/pachysolen_tannophilus_nuclear_code.txt
biokit/tables/peritrich_nuclear_code.txt
biokit/tables/rhabdopleuridae_mitochondrial_code.txt
biokit/tables/scenedesmus_obliquus_mitochondrial_code.txt
biokit/tables/standard_genetic_code.txt
biokit/tables/thraustochytrium_mitochondrial_code.txt
biokit/tables/trematode_mitochondrial_code.txt
biokit/tables/vertebrate_mitochondrial_code.txt
biokit/tables/yeast_mitochondrial_code.txt
jlsteenwyk_biokit.egg-info/PKG-INFO
jlsteenwyk_biokit.egg-info/SOURCES.txt
jlsteenwyk_biokit.egg-info/dependency_links.txt
jlsteenwyk_biokit.egg-info/entry_points.txt
jlsteenwyk_biokit.egg-info/requires.txt
jlsteenwyk_biokit.egg-info/top_level.txt