ALLELE_VALIDATION.md
CLEAVAGE_AUDIT.md
CONSTRUCT_AUDIT.md
CONSTRUCT_PROCESSING.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
vaxrank/__init__.py
vaxrank/allele_evidence.py
vaxrank/allele_validation.py
vaxrank/amino_acids.py
vaxrank/cancer_hotspots.py
vaxrank/candidate_epitope.py
vaxrank/cells.py
vaxrank/cleavage_inference.py
vaxrank/cleavage_profile.py
vaxrank/cleavage_report.py
vaxrank/combined_score_dsl.py
vaxrank/complex_variant_visualization.py
vaxrank/construct_audit.py
vaxrank/construct_sequence.py
vaxrank/context_audit.py
vaxrank/context_report.py
vaxrank/core_logic.py
vaxrank/coverage.py
vaxrank/cta_admission.py
vaxrank/epitope_config.py
vaxrank/epitope_dsl.py
vaxrank/epitope_io.py
vaxrank/epitope_logic.py
vaxrank/evidence_visualization.py
vaxrank/external_input.py
vaxrank/external_prediction.py
vaxrank/external_report.py
vaxrank/gene_pathway_check.py
vaxrank/identifiers.py
vaxrank/isovar_fusion.py
vaxrank/junction_swap.py
vaxrank/logging.conf
vaxrank/manufacturability.py
vaxrank/manufacturability_config.py
vaxrank/modalities.py
vaxrank/mrna.py
vaxrank/mrna_library.py
vaxrank/mutant_protein_fragment.py
vaxrank/mutation_visualization.py
vaxrank/native_serialization.py
vaxrank/near_self.py
vaxrank/patient_info.py
vaxrank/peptide.py
vaxrank/prediction_input.py
vaxrank/processing.py
vaxrank/processing_prediction.py
vaxrank/ranking.py
vaxrank/reference_proteome.py
vaxrank/report.py
vaxrank/risk_ligand.py
vaxrank/safety_assessment.py
vaxrank/safety_policy.py
vaxrank/sequence_context.py
vaxrank/tissue_risk.py
vaxrank/vaccine_antigen.py
vaxrank/vaccine_config.py
vaxrank/vaccine_library.py
vaxrank/vaccine_peptide.py
vaxrank/vaf.py
vaxrank/varcode_effects.py
vaxrank/vaxrank_results.py
vaxrank/version.py
vaxrank.egg-info/PKG-INFO
vaxrank.egg-info/SOURCES.txt
vaxrank.egg-info/dependency_links.txt
vaxrank.egg-info/entry_points.txt
vaxrank.egg-info/requires.txt
vaxrank.egg-info/top_level.txt
vaxrank/cli/__init__.py
vaxrank/cli/arg_parser.py
vaxrank/cli/complex_variant_visualization.py
vaxrank/cli/entry_point.py
vaxrank/cli/epitope_config_args.py
vaxrank/cli/evidence_visualization.py
vaxrank/cli/isovar_config_args.py
vaxrank/cli/mutation_visualization.py
vaxrank/cli/vaccine_config_args.py
vaxrank/config/__init__.py
vaxrank/config/default.yaml
vaxrank/config/defaults.py
vaxrank/config/loader.py
vaxrank/config/schema.py
vaxrank/data/cancer-driver-genes.csv
vaxrank/data/cancer-driver-variants.csv
vaxrank/data/cancer_hotspots_v2.tsv
vaxrank/data/class1-mhc-presentation-pathway.csv
vaxrank/data/interferon-gamma-response.csv
vaxrank/templates/cleavage_profiles.html
vaxrank/templates/construct_audit.html
vaxrank/templates/sequence_context_audit.html
vaxrank/templates/stylesheet.css
vaxrank/templates/template.html
vaxrank/templates/template.txt