LICENSE
README.md
pyproject.toml
src/hyphaeon/__init__.py
src/hyphaeon/attribution.py
src/hyphaeon/cli.py
src/hyphaeon/disease.py
src/hyphaeon/epistasis.py
src/hyphaeon/evaluation.py
src/hyphaeon/filter.py
src/hyphaeon/inference.py
src/hyphaeon/phenotype.py
src/hyphaeon/splits.py
src/hyphaeon/temporal.py
src/hyphaeon/training_data.py
src/hyphaeon.egg-info/PKG-INFO
src/hyphaeon.egg-info/SOURCES.txt
src/hyphaeon.egg-info/dependency_links.txt
src/hyphaeon.egg-info/entry_points.txt
src/hyphaeon.egg-info/requires.txt
src/hyphaeon.egg-info/top_level.txt
src/hyphaeon/model_eval/__init__.py
src/hyphaeon/model_eval/_harness.py
src/hyphaeon/model_eval/_sim.py
src/hyphaeon/model_eval/conftest.py
src/hyphaeon/model_eval/calibration/__init__.py
src/hyphaeon/model_eval/calibration/test_alignment_length.py
src/hyphaeon/model_eval/calibration/test_composition_bias.py
src/hyphaeon/model_eval/calibration/test_hyphaeon_null.py
src/hyphaeon/model_eval/calibration/test_hyphaeon_power.py
src/hyphaeon/model_eval/concordance/__init__.py
src/hyphaeon/model_eval/concordance/_common.py
src/hyphaeon/model_eval/concordance/test_hyphaeon_vs_meme.py
src/hyphaeon/model_eval/invariance/__init__.py
src/hyphaeon/model_eval/invariance/test_input_diagnostics.py
src/hyphaeon/model_eval/invariance/test_nuisance_invariance.py
src/hyphaeon/model_eval/invariance/test_phylogeny_sensitivity.py
src/hyphaeon/model_eval/reports/__init__.py
src/hyphaeon/model_eval/reports/test_composition_baseline.py
src/hyphaeon/model_eval/stability/__init__.py
src/hyphaeon/model_eval/stability/test_determinism.py
src/hyphaeon/model_eval/stability/test_numerical_edge_cases.py
tests/test_busted.py
tests/test_disease_filter_cli.py
tests/test_epistasis.py
tests/test_evaluation.py
tests/test_gpu_mem_guard.py
tests/test_imports.py
tests/test_integration.py
tests/test_phenotype.py
tests/test_splits.py
tests/test_temporal.py
tests/test_temporal_experimental.py
tests/test_training.py
tests/test_training_data.py