Open-ST report

Overview

Program Info

The program ran with the following command

 {{ metadata.cmdline }} 

Arguments

The program used the following arguments

{% for key, value in metadata.args.items() %} {% endfor %}

Parameter	Value
{{ key }}	{{ value }}

Alignment Results

One alignment per tab

{% for alignment_result in metadata.alignment_results %}

{{ alignment_result.name }}

Below we show the results of the alignment process between the staining images of {{ alignment_result.name }} and the corresponding STS (spatial transcriptomics) images.

Before and after alignment (STS to staining)

Matching keypoints between staining and STS

Estimated affine transformation model

{{ alignment_result.transformation_matrix }}

{% endfor %}