LICENSE
README.md
pyproject.toml
setup.py
BioQueue/__init__.py
BioQueue/__main__.py
BioQueue/cli.py
BioQueue/default_settings.py
BioQueue/paths.py
BioQueue/serve.py
BioQueue/settings-example.py
BioQueue/urls.py
BioQueue/wsgi.py
BioQueue/data/custom.conf
BioQueue/templates/admin/login.html
BioQueue/templates/registration/logged_out.html
BioQueue/tests/__init__.py
BioQueue/tests/test_cli.py
QueueDB/__init__.py
QueueDB/admin.py
QueueDB/apps.py
QueueDB/models.py
QueueDB/notifications.py
QueueDB/protocol_template.py
QueueDB/sqlite_setup.py
QueueDB/tests.py
QueueDB/tests_sqlite_setup.py
QueueDB/views.py
QueueDB/extmodels/GoogleDrive.py
QueueDB/extmodels/__init__.py
QueueDB/management/__init__.py
QueueDB/management/commands/__init__.py
QueueDB/management/commands/diff_schema.py
QueueDB/migrations/0001_initial.py
QueueDB/migrations/0050_protocollist_template_job_sample_sheet.py
QueueDB/migrations/0051_notificationhook.py
QueueDB/migrations/0052_virtualenvironment_recipe.py
QueueDB/migrations/0053_sync_models.py
QueueDB/migrations/0054_merge_20261004_1337.py
QueueDB/migrations/0054_slave_cluster_paths.py
QueueDB/migrations/0055_merge_20261010_1247.py
QueueDB/migrations/0055_slave_cluster_path_columns.py
QueueDB/migrations/0056_slave_cluster_managers.py
QueueDB/migrations/__init__.py
accounts/__init__.py
accounts/admin.py
accounts/apps.py
accounts/forms.py
accounts/models.py
accounts/tests.py
accounts/urls.py
accounts/views.py
accounts/migrations/__init__.py
accounts/templates/accounts/login.html
accounts/templates/accounts/register.html
bioqueue.egg-info/PKG-INFO
bioqueue.egg-info/SOURCES.txt
bioqueue.egg-info/dependency_links.txt
bioqueue.egg-info/entry_points.txt
bioqueue.egg-info/requires.txt
bioqueue.egg-info/top_level.txt
ui/__init__.py
ui/admin.py
ui/apps.py
ui/decorators.py
ui/files.py
ui/http.py
ui/services.py
ui/template_editor.py
ui/test_settings.py
ui/test_urls.py
ui/urls.py
ui/plugins/__init__.py
ui/plugins/api_urls.py
ui/plugins/legacy.py
ui/plugins/urls.py
ui/static/ui3/app.css
ui/static/ui3/dag.js
ui/static/ui3/logo.png
ui/templates/ui3/account.html
ui/templates/ui3/base.html
ui/templates/ui3/login.html
ui/templates/ui3/register.html
ui/templates/ui3/archives/_table.html
ui/templates/ui3/archives/list.html
ui/templates/ui3/dag/explorer.html
ui/templates/ui3/environments/_edit_modal.html
ui/templates/ui3/environments/_table.html
ui/templates/ui3/environments/list.html
ui/templates/ui3/jobs/_archive_modal.html
ui/templates/ui3/jobs/_card.html
ui/templates/ui3/jobs/_combo_options.html
ui/templates/ui3/jobs/_compare_modal.html
ui/templates/ui3/jobs/_edit_modal.html
ui/templates/ui3/jobs/_files_modal.html
ui/templates/ui3/jobs/_files_rename_modal.html
ui/templates/ui3/jobs/_files_rows.html
ui/templates/ui3/jobs/_files_rows_append.html
ui/templates/ui3/jobs/_files_sentinel.html
ui/templates/ui3/jobs/_files_table.html
ui/templates/ui3/jobs/_history_modal.html
ui/templates/ui3/jobs/_log_modal.html
ui/templates/ui3/jobs/_parameter_scaffold.html
ui/templates/ui3/jobs/_preview_modal.html
ui/templates/ui3/jobs/_relations_modal.html
ui/templates/ui3/jobs/_rename_modal.html
ui/templates/ui3/jobs/_results.html
ui/templates/ui3/jobs/_results_picker_modal.html
ui/templates/ui3/jobs/_resume_modal.html
ui/templates/ui3/jobs/_sample_scaffold.html
ui/templates/ui3/jobs/_uploads_modal.html
ui/templates/ui3/jobs/compare.html
ui/templates/ui3/jobs/list.html
ui/templates/ui3/jobs/migrate.html
ui/templates/ui3/jobs/new.html
ui/templates/ui3/jobs/protocol_diff.html
ui/templates/ui3/notifications/_edit_modal.html
ui/templates/ui3/notifications/_events.html
ui/templates/ui3/notifications/_fields.html
ui/templates/ui3/notifications/_table.html
ui/templates/ui3/notifications/list.html
ui/templates/ui3/partials/pager.html
ui/templates/ui3/partials/plugin_nav.html
ui/templates/ui3/partials/running_badge.html
ui/templates/ui3/partials/toast.html
ui/templates/ui3/protocols/_detail.html
ui/templates/ui3/protocols/_env_combo.html
ui/templates/ui3/protocols/_shortcut_modal.html
ui/templates/ui3/protocols/_shortcuts.html
ui/templates/ui3/protocols/_step_draft_row.html
ui/templates/ui3/protocols/_step_fields.html
ui/templates/ui3/protocols/_step_modal.html
ui/templates/ui3/protocols/_template_editor.html
ui/templates/ui3/protocols/_template_items.html
ui/templates/ui3/protocols/_template_pairs.html
ui/templates/ui3/protocols/_workspace.html
ui/templates/ui3/protocols/list.html
ui/templates/ui3/protocols/new.html
ui/templates/ui3/protocols/new_template.html
ui/templates/ui3/references/_edit_modal.html
ui/templates/ui3/references/_table.html
ui/templates/ui3/references/list.html
ui/templates/ui3/runners/_edit_modal.html
ui/templates/ui3/runners/_fields.html
ui/templates/ui3/runners/_table.html
ui/templates/ui3/runners/list.html
ui/templates/ui3/users/_table.html
ui/templates/ui3/users/list.html
ui/templates/ui3/workspaces/_edit_modal.html
ui/templates/ui3/workspaces/_table.html
ui/templates/ui3/workspaces/list.html
ui/templatetags/__init__.py
ui/templatetags/ui3_tags.py
ui/tests/__init__.py
ui/tests/test_archives.py
ui/tests/test_auth.py
ui/tests/test_dag.py
ui/tests/test_environments.py
ui/tests/test_jobs.py
ui/tests/test_migrate.py
ui/tests/test_notifications.py
ui/tests/test_plugins.py
ui/tests/test_protocol_template.py
ui/tests/test_protocols.py
ui/tests/test_references.py
ui/tests/test_runners.py
ui/tests/test_template_editor.py
ui/tests/test_users.py
ui/tests/test_workspaces.py
ui/views/__init__.py
ui/views/archives.py
ui/views/auth.py
ui/views/dag.py
ui/views/environments.py
ui/views/jobs.py
ui/views/notifications.py
ui/views/protocols.py
ui/views/references.py
ui/views/runners.py
ui/views/users.py
ui/views/workspaces.py
worker/__init__.py
worker/__main__.py
worker/_bootstrap.py
worker/bases.py
worker/bioqueue.py
worker/cli.py
worker/cluster_support.py
worker/cpu_prior.py
worker/django_initial.py
worker/ml_collector.py
worker/ml_container.py
worker/smoke.py
worker/sqlite_settings.py
worker/step.py
worker/test_settings.py
worker/test_urls.py
worker/testing.py
worker/cluster_models/HTCondor.py
worker/cluster_models/LSF.py
worker/cluster_models/Slurm.py
worker/cluster_models/TorquePBS.py
worker/cluster_models/__init__.py
worker/cluster_models/cluster_model.py
worker/queue/__init__.py
worker/queue/checkpoints.py
worker/queue/cluster_request.py
worker/queue/constants.py
worker/queue/input_check.py
worker/queue/job_queue.py
worker/queue/process_runner.py
worker/queue/protocol.py
worker/queue/scheduler.py
worker/queue/task.py
worker/tests/__init__.py
worker/tests/harness.py
worker/tests/test_bootstrap.py
worker/tests/test_cli.py
worker/tests/test_cluster.py
worker/tests/test_cpu_prior.py
worker/tests/test_input_check.py
worker/tests/test_integration.py
worker/tests/test_notifications.py
worker/tests/test_process_runner.py
worker/tests/test_scheduler.py
worker/tests/test_step_shell.py