LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
spatialformer/GraphSAGE.py
spatialformer/__init__.py
spatialformer/data_loader.py
spatialformer/graphsage.py
spatialformer/processor.py
spatialformer/train.py
spatialformer/utils.py
spatialformer.egg-info/PKG-INFO
spatialformer.egg-info/SOURCES.txt
spatialformer.egg-info/dependency_links.txt
spatialformer.egg-info/requires.txt
spatialformer.egg-info/top_level.txt
spatialformer/config/__init__.py
spatialformer/config/_config_fine_tune_probe.json
spatialformer/config/_config_graphsave.json
spatialformer/config/_config_train.json
spatialformer/config/_config_train_large_pair.json
spatialformer/config/_config_train_large_single.json
spatialformer/dataloader/__init__.py
spatialformer/dataloader/dataloader_paired.py
spatialformer/gene_gene_calculation/__init__.py
spatialformer/gene_gene_calculation/build_h5ad.py
spatialformer/gene_gene_calculation/find_gene_interaction.py
spatialformer/gene_gene_calculation/h5toloader.py
spatialformer/gene_gene_calculation/mask_dataset.py
spatialformer/gene_gene_calculation/process.py
spatialformer/model/Spaformer.py
spatialformer/model/Spaformer_pair.py
spatialformer/model/__init__.py
spatialformer/model/model.py
spatialformer/model/settings.py
spatialformer/model/submodules/__init__.py
spatialformer/model/submodules/activations.py
spatialformer/model/submodules/alibi.py
spatialformer/model/submodules/flash_attention2.py
spatialformer/model/submodules/layer_modules.py
spatialformer/model/submodules/masked_batchnorm.py
spatialformer/model/submodules/masked_conv.py
spatialformer/model/submodules/modules.py
spatialformer/preprocess/__init__.py
spatialformer/preprocess/find_gene_interaction.py
spatialformer/spatial_embeddings/__init__.py
spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl
spatialformer/tokenizer/__init__.py
spatialformer/tokenizer/token.json
spatialformer/tokenizer/tokenv2.json
spatialformer/tokenizer/tokenv3.json
spatialformer/tokenizer/tokenv4.json
spatialformer/tokenizer/tokenv5.json
spatialformer/tools/__init__.py
spatialformer/tools/get_embeddings.py