STAT - Spatial Transcriptomics Analysis

STAT

Spatial Transcriptomics Analysis Tool

Dataset Directory Directory containing .h5ad AnnData file(s) with spatial coordinates (obs['x'], obs['y'] or obsm['spatial']). Optional: tissue images (.tif, .npy).

Session Name

LLM Configuration

Provider

Model e.g. gpt-4o, gpt-4o-mini

API Key

Base URL (auto-filled) Auto-detected from provider. Override only if using a proxy or custom endpoint.

Skills

⚙

Slices

Visualization

Cell Types Gene Expression Proportions

Cell Types

Regions of Interest

Data Info

Agent Chat

Ask questions about your spatial transcriptomics data.

Examples: "Annotate cell types", "Find spatially variable genes", "Show BRCA1 expression"

Skills

Session Logs