.copier-answers.yml
.git_archival.txt
.gitattributes
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
AGENTS.md
LICENSE
README.md
pyproject.toml
uv.lock
.github/CONTRIBUTING.md
.github/dependabot.yml
.github/matchers/pylint.json
.github/workflows/cd.yml
.github/workflows/ci.yml
docs/cli.md
docs/conf.py
docs/developer-guide.md
docs/getting-started.md
docs/index.md
docs/scientific_tutorial/tutorial_ple_white_matter_analysis.md
docs/scientific_tutorial/tutorial_ple_white_matter_analysis_files/tutorial_ple_white_matter_analysis_13_0.png
docs/scientific_tutorial/tutorial_ple_white_matter_analysis_files/tutorial_ple_white_matter_analysis_17_0.png
docs/scientific_tutorial/tutorial_ple_white_matter_analysis_files/tutorial_ple_white_matter_analysis_19_0.png
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docs/scientific_tutorial/tutorial_ple_white_matter_analysis_files/tutorial_ple_white_matter_analysis_9_0.png
docs/tutorials/example-custom-step.md
docs/tutorials/example-group-template.md
docs/tutorials/example-harmonization.md
docs/tutorials/example-pipeline.md
docs/tutorials/example-region-analysis.md
docs/tutorials/example-single-step.md
docs/tutorials/index.md
docs/tutorials/example-group-template_files/example-group-template_13_0.png
docs/tutorials/example-group-template_files/example-group-template_19_0.png
docs/tutorials/example-group-template_files/example-group-template_7_1.png
docs/tutorials/example-group-template_files/example-group-template_7_2.png
docs/tutorials/example-harmonization_files/example-harmonization_10_0.png
docs/tutorials/example-harmonization_files/example-harmonization_4_0.png
docs/tutorials/example-harmonization_files/example-harmonization_8_0.png
docs/tutorials/example-pipeline_files/example-pipeline_10_0.png
docs/tutorials/example-pipeline_files/example-pipeline_13_1.png
docs/tutorials/example-pipeline_files/example-pipeline_16_0.png
docs/tutorials/example-pipeline_files/example-pipeline_19_0.png
docs/tutorials/example-pipeline_files/example-pipeline_22_0.png
docs/tutorials/example-pipeline_files/example-pipeline_25_1.png
docs/tutorials/example-pipeline_files/example-pipeline_28_1.png
docs/tutorials/example-pipeline_files/example-pipeline_7_0.png
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docs/tutorials/example-region-analysis_files/example-region-analysis_26_0.png
docs/tutorials/example-region-analysis_files/example-region-analysis_7_0.png
notebooks/README.md
notebooks/example-custom-step.py
notebooks/example-group-template.py
notebooks/example-harmonization.py
notebooks/example-pipeline.py
notebooks/example-region-analysis.py
notebooks/example-single-step.py
scripts/update-notebook-pages.py
src/kwneuro/__init__.py
src/kwneuro/_version.py
src/kwneuro/_version.pyi
src/kwneuro/build_template.py
src/kwneuro/cache.py
src/kwneuro/cli.py
src/kwneuro/csd.py
src/kwneuro/denoise.py
src/kwneuro/dti.py
src/kwneuro/dwi.py
src/kwneuro/external.py
src/kwneuro/files.py
src/kwneuro/harmonize.py
src/kwneuro/io.py
src/kwneuro/masks.py
src/kwneuro/noddi.py
src/kwneuro/py.typed
src/kwneuro/reg.py
src/kwneuro/resource.py
src/kwneuro/structural.py
src/kwneuro/tractseg.py
src/kwneuro/util.py
src/kwneuro.egg-info/PKG-INFO
src/kwneuro.egg-info/SOURCES.txt
src/kwneuro.egg-info/dependency_links.txt
src/kwneuro.egg-info/entry_points.txt
src/kwneuro.egg-info/requires.txt
src/kwneuro.egg-info/top_level.txt
tests/test_build_template.py
tests/test_cache.py
tests/test_cli.py
tests/test_csd.py
tests/test_deep_equal.py
tests/test_dwi.py
tests/test_external.py
tests/test_files.py
tests/test_harmonize.py
tests/test_io.py
tests/test_masks.py
tests/test_package.py
tests/test_reg.py
tests/test_resource.py
tests/test_structural.py
tests/test_subsample.py
tests/test_tractseg.py
tests/test_util.py