#!/usr/bin/env bash
set -ex

# Parse --rerun_efel_pipeline argument (default: 0)
RERUN_EFEL_PIPELINE=0
# Check if argument provided
if [[ $# -ge 1 ]]; then
    if [[ "$1" == "0" || "$1" == "1" ]]; then
        RERUN_EFEL_PIPELINE="$1"
    else
        echo "Error: argument must be 0 or 1"
        exit 1
    fi
fi

if [[ "$RERUN_EFEL_PIPELINE" == "1" ]]; then
    python -m LCNE_patchseq_analysis.efel.pipeline
fi

python generate_main_figures.py
