.flake8
.gitattributes
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LICENSE
README.md
pyproject.toml
setup.py
.claude/settings.local.json
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.codeocean/datasets.json
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.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/user-story.md
.github/workflows/init.yml
.github/workflows/tag_and_publish.yml
.github/workflows/test_and_lint.yml
assets/fonts/Helvetica.ttf
code/generate_main_figures.py
code/run
docs/Makefile
docs/make.bat
docs/source/conf.py
docs/source/index.rst
docs/source/_static/dark-logo.svg
docs/source/_static/light-logo.svg
environment/Dockerfile
environment/postInstall
notebook/demo_raw_spike_waveforms.ipynb
notebook/efel.ipynb
notebook/figures.ipynb
notebook/morphology.ipynb
notebook/playground.ipynb
notebook/population_analysis.ipynb
src/LCNE_patchseq_analysis/__init__.py
src/LCNE_patchseq_analysis.egg-info/PKG-INFO
src/LCNE_patchseq_analysis.egg-info/SOURCES.txt
src/LCNE_patchseq_analysis.egg-info/dependency_links.txt
src/LCNE_patchseq_analysis.egg-info/requires.txt
src/LCNE_patchseq_analysis.egg-info/top_level.txt
src/LCNE_patchseq_analysis/data_util/__init__.py
src/LCNE_patchseq_analysis/data_util/mesh.py
src/LCNE_patchseq_analysis/data_util/metadata.py
src/LCNE_patchseq_analysis/data_util/nwb.py
src/LCNE_patchseq_analysis/efel/__init__.py
src/LCNE_patchseq_analysis/efel/core.py
src/LCNE_patchseq_analysis/efel/efel_per_spike_features.json
src/LCNE_patchseq_analysis/efel/io.py
src/LCNE_patchseq_analysis/efel/pipeline.py
src/LCNE_patchseq_analysis/efel/plot.py
src/LCNE_patchseq_analysis/efel/population.py
src/LCNE_patchseq_analysis/efel/util.py
src/LCNE_patchseq_analysis/figures/__init__.py
src/LCNE_patchseq_analysis/figures/main_imputation.py
src/LCNE_patchseq_analysis/figures/main_pca_tau.py
src/LCNE_patchseq_analysis/figures/util.py
src/LCNE_patchseq_analysis/figures/cached/__init__.py
src/LCNE_patchseq_analysis/figures/cached/asymmetry_index_from_eFEL.py
src/LCNE_patchseq_analysis/figures/cached/asymmetry_index_from_waveform.py
src/LCNE_patchseq_analysis/figures/cached/fig_3a.py
src/LCNE_patchseq_analysis/figures/cached/fig_3c.py
src/LCNE_patchseq_analysis/figures/cached/main_figure.py
src/LCNE_patchseq_analysis/figures/cached/sup_figures.py
src/LCNE_patchseq_analysis/pipeline_util/__init__.py
src/LCNE_patchseq_analysis/pipeline_util/ephys.py
src/LCNE_patchseq_analysis/pipeline_util/lims.py
src/LCNE_patchseq_analysis/pipeline_util/metadata.py
src/LCNE_patchseq_analysis/pipeline_util/s3.py
src/LCNE_patchseq_analysis/pipeline_util/sequencing.py
src/LCNE_patchseq_analysis/plot_util/swc.py
src/LCNE_patchseq_analysis/population_analysis/__init__.py
src/LCNE_patchseq_analysis/population_analysis/anova.py
src/LCNE_patchseq_analysis/population_analysis/filters.py
src/LCNE_patchseq_analysis/population_analysis/spikes.py
tests/__init__.py
tests/test_example.py