CHANGELOG.md
LICENSE
MANIFEST.in
README.md
ROADMAP.md
pyproject.toml
setup.py
bin/mageck2
mageck2/__init__.py
mageck2/argsParser.py
mageck2/bayes_selection.py
mageck2/cnv_estimation.py
mageck2/cnv_normalization.py
mageck2/count_report.Rmd
mageck2/crisprFunction.py
mageck2/dispersion_characterization.py
mageck2/fastq_template.Rnw
mageck2/fdr_calculation.py
mageck2/fileOps.py
mageck2/mageckCount.py
mageck2/mageckCountIO.py
mageck2/mageckCountNorm.py
mageck2/mageckCountQC.py
mageck2/mageckMathFunc.py
mageck2/mageckQC.gmt
mageck2/mageck_bayes_PPI.py
mageck2/mleargparse.py
mageck2/mleclassdef.py
mageck2/mledesignmat.py
mageck2/mleem.py
mageck2/mleem_bayes.py
mageck2/mlegensimexamples.py
mageck2/mleinstanceio.py
mageck2/mlelowess.py
mageck2/mlemageck.py
mageck2/mlemageck_bayes.py
mageck2/mlemeanvar.py
mageck2/mlemultiprocessing.py
mageck2/mlesgeff.py
mageck2/pathwayFunc.py
mageck2/plot_template.RTemplate
mageck2/plot_template.Rnw
mageck2/plot_template_indvgene.RTemplate
mageck2/pvalue_beta_plot.py
mageck2/qnorm_table.txt
mageck2/testVisual.py
mageck2/testVisualCount.py
mageck2/test_report.Rmd
mageck2/version.py
mageck2.egg-info/PKG-INFO
mageck2.egg-info/SOURCES.txt
mageck2.egg-info/dependency_links.txt
mageck2.egg-info/requires.txt
mageck2.egg-info/top_level.txt
rra/Makefile
rra/bin/.gitkeep
rra/include/RRA.h
rra/include/math_api.h
rra/include/rngs.h
rra/include/rvgs.h
rra/include/words.h
rra/src/RRA.cpp
rra/src/RRA_mainentry.cpp
rra/src/classdef.h
rra/src/fileio.cpp
rra/src/fileio.h
rra/src/math_api.cpp
rra/src/rngs.cpp
rra/src/rvgs.cpp
rra/src/words.cpp
tests/test_smoke.py
tests/data/count_table.txt