LICENSE
NOTICE
README.md
pyproject.toml
src/evidome/__init__.py
src/evidome/checkpoint.py
src/evidome/cli.py
src/evidome/collisions.py
src/evidome/combine.py
src/evidome/crosswalk.py
src/evidome/database_value.py
src/evidome/enrich.py
src/evidome/errors.py
src/evidome/figures.py
src/evidome/gene_ids.py
src/evidome/genesets.py
src/evidome/genomes.py
src/evidome/human_tables.py
src/evidome/identity.py
src/evidome/jsonio.py
src/evidome/parallel.py
src/evidome/pathway_signs.py
src/evidome/pipeline.py
src/evidome/reference.py
src/evidome/regulators.py
src/evidome/report.py
src/evidome/sister.py
src/evidome/slurm.py
src/evidome/species.py
src/evidome/utility.py
src/evidome/version.py
src/evidome/wide_stats.py
src/evidome/xlsx.py
src/evidome.egg-info/PKG-INFO
src/evidome.egg-info/SOURCES.txt
src/evidome.egg-info/dependency_links.txt
src/evidome.egg-info/entry_points.txt
src/evidome.egg-info/requires.txt
src/evidome.egg-info/top_level.txt
src/evidome/docs/INPUT_FORMAT.md
src/evidome/web/evidence_browser.html
tests/test_a_burden_table_is_read_as_a_burden_test.py
tests/test_burden_enrichment_is_weighted_by_detectability.py
tests/test_collisions_are_decided_by_majority.py
tests/test_database_utility_is_measured_on_the_results.py
tests/test_database_value_explains_the_variation.py
tests/test_enrichment_is_exact_and_reproducible.py
tests/test_every_json_is_stamped.py
tests/test_every_statistical_test_transfers.py
tests/test_evidence_bundle_describes_itself.py
tests/test_figures_are_manuscript_ready.py
tests/test_ftests_take_direction_from_their_contrasts.py
tests/test_gene_sets_are_indexed_to_human_ensembl.py
tests/test_human_tables_are_one_value_per_human_gene.py
tests/test_one_command_runs_everything.py
tests/test_one_place_decides_reuse.py
tests/test_parallel_is_ordered.py
tests/test_paralome_is_asked_not_second_guessed.py
tests/test_pathways_get_activity_patterns_from_reactome.py
tests/test_reference_and_crosswalk.py
tests/test_registered_genomes_identify_the_input.py
tests/test_regulators_follow_signed_targets.py
tests/test_review_pass3_and_combine.py
tests/test_review_pass_fixes.py
tests/test_slurm_backend_matches_local.py
tests/test_symbols_and_ncbi_ids_are_translated.py
tests/test_the_input_table_is_read_as_declared.py
tests/test_the_name_lives_in_one_place.py
tests/test_tool_results_are_read_as_they_come.py
tests/test_version_and_errors.py