CLAUDE.md
LICENSE
MANIFEST.in
PLAN.md
README.md
pyproject.toml
foldreport/__init__.py
foldreport/cli.py
foldreport/figures.py
foldreport/metrics.py
foldreport/models.py
foldreport.egg-info/PKG-INFO
foldreport.egg-info/SOURCES.txt
foldreport.egg-info/dependency_links.txt
foldreport.egg-info/entry_points.txt
foldreport.egg-info/requires.txt
foldreport.egg-info/top_level.txt
foldreport/parsers/__init__.py
foldreport/parsers/af3_server.py
foldreport/parsers/alphafold_db.py
foldreport/parsers/base.py
foldreport/parsers/boltz.py
foldreport/parsers/colabfold.py
foldreport/parsers/openfold3.py
foldreport/report/3Dmol-min.js
foldreport/report/__init__.py
foldreport/report/builder.py
foldreport/report/template.html
tests/conftest.py
tests/make_fixtures.py
tests/test_alphafold_db.py
tests/test_cli.py
tests/test_colabfold_parser.py
tests/test_edge_cases.py
tests/test_metrics_and_figures.py
tests/test_other_parsers.py
tests/test_report.py
tests/data/af3_server/fold_mycomplex_full_data_0.json
tests/data/af3_server/fold_mycomplex_full_data_1.json
tests/data/af3_server/fold_mycomplex_job_request.json
tests/data/af3_server/fold_mycomplex_model_0.cif
tests/data/af3_server/fold_mycomplex_model_1.cif
tests/data/af3_server/fold_mycomplex_summary_confidences_0.json
tests/data/af3_server/fold_mycomplex_summary_confidences_1.json
tests/data/af3_server/terms_of_use.md
tests/data/alphafold_db/AF-P00001-F1-metadata.json
tests/data/alphafold_db/AF-P00001-F1-model_v6.cif
tests/data/alphafold_db/AF-P00001-F1-predicted_aligned_error_v6.json
tests/data/alphafold_db/AF-P00002-F1-metadata.json
tests/data/alphafold_db/AF-P00002-F1-model_v6.cif
tests/data/alphafold_db/AF-P00002-F1-predicted_aligned_error_v6.json
tests/data/boltz/log.txt
tests/data/boltz/predictions/mycomplex/confidence_mycomplex_model_0.json
tests/data/boltz/predictions/mycomplex/confidence_mycomplex_model_1.json
tests/data/boltz/predictions/mycomplex/mycomplex_model_0.cif
tests/data/boltz/predictions/mycomplex/mycomplex_model_1.cif
tests/data/boltz/predictions/mycomplex/pae_mycomplex_model_0.npz
tests/data/boltz/predictions/mycomplex/pae_mycomplex_model_1.npz
tests/data/boltz/predictions/mycomplex/plddt_mycomplex_model_0.npz
tests/data/boltz/predictions/mycomplex/plddt_mycomplex_model_1.npz
tests/data/colabfold/cite.bibtex
tests/data/colabfold/complex.a3m
tests/data/colabfold/complex_scores_rank_001_alphafold2_multimer_v3_model_3_seed_000.json
tests/data/colabfold/complex_scores_rank_002_alphafold2_multimer_v3_model_1_seed_000.json
tests/data/colabfold/complex_unrelaxed_rank_001_alphafold2_multimer_v3_model_3_seed_000.pdb
tests/data/colabfold/complex_unrelaxed_rank_002_alphafold2_multimer_v3_model_1_seed_000.pdb
tests/data/colabfold/config.json
tests/data/colabfold/log.txt
tests/data/empty/readme.txt
tests/data/malformed/broken_scores_rank_001_alphafold2_ptm_model_1_seed_000.json
tests/data/malformed/broken_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
tests/data/openfold3/mycomplex/experiment_config.json
tests/data/openfold3/mycomplex/seed-1_sample-0/mycomplex_confidences.json
tests/data/openfold3/mycomplex/seed-1_sample-0/mycomplex_model.cif
tests/data/openfold3/mycomplex/seed-1_sample-0/mycomplex_summary_confidences.json
tests/data/openfold3/mycomplex/seed-1_sample-1/mycomplex_confidences.json
tests/data/openfold3/mycomplex/seed-1_sample-1/mycomplex_model.cif
tests/data/openfold3/mycomplex/seed-1_sample-1/mycomplex_summary_confidences.json
tests/data/single_chain/monomer_scores_rank_001_alphafold2_ptm_model_3_seed_000.json
tests/data/single_chain/monomer_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb