pirl_trufflepig-1.15.0.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
trufflepig/__init__.py,sha256=jDKs09SdEXXZSeC8-VdzL1Znzr4fcro_R4Up_7Zzebc,902
trufflepig/_data.py,sha256=hE06cpO2xxdG_n1ffIhKokwLtEeYMckWqN_UqYNncu8,467
trufflepig/aggregate_gene_expression.py,sha256=-QciojOnMcR8pYwSGHH6-pZR00lbxAPAwHaKbNJGzKQ,1810
trufflepig/alteration_effects.py,sha256=DscTkNtulPaH3GzRAJ8WTpAINx4VPf6JfP1osO0mVQU,9192
trufflepig/alterations.py,sha256=3SGJoW7D5vzk1PgN1AtyC_Jt4TpPCkE6Ej2o-Q7zCjI,11826
trufflepig/aneuploidy_axis.py,sha256=Aj4k7p_AUKelfVuDlcFTfRcNNDmFU0PbYe0rQvKHcV0,5710
trufflepig/brief.py,sha256=VsYV_jEFCEpxGtBuTOWp9w-1wGavXRHCnvB9CaXPXYk,124909
trufflepig/cancer_ontology.py,sha256=9L7g2q0pEBc75xEDT59WsIXIl5UCr_euZnd3uRkJaZc,9094
trufflepig/cancer_type_centroid.py,sha256=3saCjiyfymRG8nX0zbwo--k2yEEXrwVQULamlMDRlWA,37718
trufflepig/cancer_type_evidence.py,sha256=sWGp2LHCuoHtvLea1uGeO0JXRFy8_rtoTr2cPD3K_0o,200409
trufflepig/cancer_type_ontology.py,sha256=-PTsFltmSiK4nfyN0Yr35x9B1LX8t6AOTjTYDNQMuX4,14978
trufflepig/clean_tpm.py,sha256=Qpqno0HzKmwNmnpR8WDDImvyugQe3g379EWSGDnlQew,10147
trufflepig/cli.py,sha256=kHGdDiQip-z5mZisdLgY0IPgpz0ChBgJn3lmmOMxBXw,12809
trufflepig/cohort_deconvolve.py,sha256=i6ZJLZNmgoSHp_2pVi4IDl4tGqsHsXUsoPaY1HZgar8,14416
trufflepig/common.py,sha256=xhpOeZKeRA7h0gP-wciWzxakPyT4C3pBMjPLWlDvoQo,32498
trufflepig/confidence.py,sha256=lWNOZDlr5D2GVO9jCIW0JWzQJAIPtPQuynKetslH_9w,20824
trufflepig/degenerate_subtype.py,sha256=JyWqx3SHxXfyo9gzwhqErUhX7v2IeBv-L0srgkD4fXY,14844
trufflepig/disease_state_rules.py,sha256=OneVZZtg6St3L-KsOL1ipexhBCc0zQgSoi7PB8CTexE,10249
trufflepig/evidence_tables.py,sha256=h10F-pUWXMziwR_krbHrzHxONNf1YS_1oCg949C-qZQ,14729
trufflepig/expression_classifier.py,sha256=g166h3eOo-L7EXh3p2B4Ku3VdlRRziv3eGQ1VEyWvkQ,4974
trufflepig/expression_decomposition.py,sha256=G4_TWWxyTDigCuUQcmRainZhDuP9BWAWcXuIQbw6-Ns,35712
trufflepig/expression_normalize.py,sha256=CS16d7SvoXHR_DuBk_c7Hfbj2H5EP33a1S8Gko6oVQk,1875
trufflepig/expression_qc.py,sha256=WS_9mcn1isLNqEAFyogNaZZiCHVKW1QvkxLsJTHZVP8,14735
trufflepig/feature_spaces.py,sha256=EUpbxduz01GTue7Dc1P_Gm2jwJ1-pY9vC6ZN_ItjNF4,6707
trufflepig/format.py,sha256=a5LcsXvgOqctFFijkf1zCW1BYMXwQBJA9UJ_-sUQbu8,4738
trufflepig/fusion_effects.py,sha256=GWbQSHxjmJtdgP7bNZk_lmisa6AL7VTFSXhwRy_VieQ,12987
trufflepig/fusions.py,sha256=Ht3L5Ma-K1FxREoLgA2RzWnvWF6bAoGCNA3jpI2aZdw,12649
trufflepig/healthy_vs_tumor.py,sha256=keyMTTjFIHavNIOaiLASbGE9Hq2sG7OQorygYgFUOY8,36032
trufflepig/hla.py,sha256=GPaaVL51I3okR8183SYT6iRY-Obbx3rb7XF_IMRqJDY,4359
trufflepig/lineage_evidence.py,sha256=ktarbDCOujZ-76E-w1GCXL-W3de-fFEcbOgn6FlfsQc,11596
trufflepig/lineage_marker_recall.py,sha256=YYREuOoaDCEU0nZaiTSbBHFTR3qjl4T1Hk8lzIpI4Pk,9565
trufflepig/lineage_panels.py,sha256=bJQAp8SZ1D-kEVqX4nxlIGuNceIx5YCk36QihvEETtU,31738
trufflepig/literature_signatures.py,sha256=QoF1Esv9DBe7O71QHHu-4Ezbzeri5Z6gmCUSLzHCV4o,25700
trufflepig/load_expression.py,sha256=PIc8pPqycV1QSNFQrUfJMQuXP1tefk_sK_bjDlF7XaY,63994
trufflepig/main.py,sha256=m3TuKdc2k0kW_aJWWnlndraP2JJq5vbXr619IPc9s0Q,392557
trufflepig/normalization_usage.py,sha256=ah0W_iH6vyWWnyEoUFJOuvuMBGpdm_dLUqihw9UTu2U,14979
trufflepig/pipeline.py,sha256=5jdQhLFI2zgUhP1o4ekfYTGL92ByhX3E2yF4EQHEwxY,2029
trufflepig/plot.py,sha256=ga-BF6uDfX_LlblfR5EYm5ID8uO21wPZq__IWqQXM2Y,5555
trufflepig/plot_context.py,sha256=dJFNB688Ze6Y60kRwM1wte2Ye9tP2de8MhIiQMhj2a4,3280
trufflepig/plot_data_helpers.py,sha256=g-i4BXzBIushmkNC3pSoZMDz78H2YfcHYwpsK4p0YOc,14486
trufflepig/plot_embedding.py,sha256=FrM1TYWAaxj4z0iWLK6maApVkFevInBldlm-b8Jqq7Q,118819
trufflepig/plot_reference_lines.py,sha256=psrRc4i2F3c_36EEDydCC-Wh6lWHDNhmqROYRhxuTWE,5775
trufflepig/plot_scatter.py,sha256=1FK0DF0kgjfjTSoXfQtgEG6juQRGRAf_N17Ke4mQCZ0,12861
trufflepig/plot_strip.py,sha256=TwaK5EmLwYaRRy8uW7JOQJV3X4kw-89Q3yNBqkL5NEo,11533
trufflepig/plot_subtype_signature.py,sha256=VP-MoLTVeuVluuvLqhJVFxl4vYN4X3WWLmwpbShnpOM,9028
trufflepig/plot_target_deep_dive.py,sha256=OfpqOAH4EU7K7I15v7VwK5xwHhUoA7ttYqTml7leS2w,56511
trufflepig/plot_therapy.py,sha256=XeiRm8GXX8VQO5njneL2_Imcca6iD6wn_gFzW16Ev8M,58880
trufflepig/plot_tumor_expr.py,sha256=kJhUhjI9ODsqFcSXtFA-Vl4cqI7MKleRgbQkqXbYJHA,111964
trufflepig/provenance.py,sha256=yPUW5fQboFypbjURe9ryUDtUQZZrbzqrQhRp5WHLZAw,13139
trufflepig/purity_calibration.py,sha256=OBCBltJxErHfSYgod-OZn2t44AzeRX0594otDGr79rw,6692
trufflepig/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
trufflepig/rare_inference.py,sha256=NxEx2FvTCV4pEp7WTYTYkBN0kV65Wf6mqaAvNoJwrNM,20947
trufflepig/reasoning.py,sha256=uNfcOfhQBn7S3-lIt0EhjB6PrsmUCr59bHBOwpWdCXo,17564
trufflepig/reference.py,sha256=FclVCqPJ9d8ENZRI09CPtgKjfaKdOTb3IlbyYIG7Ges,24077
trufflepig/reporting.py,sha256=cGhDXlGuwyE_3f3PatXRK4MQtgmSjSiRyTEZDoAfxes,80639
trufflepig/rna_qc.py,sha256=vZ8SNPLaugsBOdI2_b2ERZidAGYdcJnAv0_wUHIY4lQ,26763
trufflepig/sample_context.py,sha256=JQd_36APuWDrx1j9c_xSC3yz3Q1Ogd2FJIQg-O6qgtY,73415
trufflepig/sample_quality.py,sha256=wr1mOtm0sQVhK4yo61YyU8JGHlxtSIgmg1QFZ5YPpzc,24275
trufflepig/signal_views.py,sha256=ktqVYbLvExV0zW3gOLcEcGABq90MTDYCOoJUBspqgyA,7222
trufflepig/subtype_signature.py,sha256=bQK51Ne3RGLzHL8jFfmPGVAQbrAFnHjLNWdYPB741iQ,11309
trufflepig/tcga_decompose.py,sha256=FLjfE35JpelAzvVqe9uiH4cPHJZwJwKQxE-WYUhOrg0,22326
trufflepig/therapeutic_agents.py,sha256=d77pIozIhTN_DPYXSCYyuAqX02IR2tGB4aJRRljtQeQ,9047
trufflepig/therapy_response.py,sha256=9rvUKk1SX3Kl32yxAhyby46zEvNNo8VGu2SrwQqfuHI,21865
trufflepig/transcript_to_gene.py,sha256=t-Hq89pnQ2RC1Z1bijyeq4v-RLd3kQNKfBGMEgMUeTw,2477
trufflepig/tumor_evidence.py,sha256=fZuOyGlG02JIcKdu4sLYZd7sAoMpgAlclXKnjGV-FhQ,8104
trufflepig/tumor_purity.py,sha256=EGlW914CbhWX_78cIQyp5vyZGZVHfqDe94Wg-c1GWeo,221317
trufflepig/tumor_type_ontology.py,sha256=O31mFPj3evn4IUwPdlTb5juy9f4v7stYKgzAPgiKSlw,19845
trufflepig/version.py,sha256=P2yByNi8a8mZOcCjrOVzsjakv8Wskvhrasq0LGn-vWk,231
trufflepig/workspace.py,sha256=a9_vBJKpUxqvgAwL9zd__nXPRJYEuE6rBsM2AlZciaE,3373
trufflepig/analyze/__init__.py,sha256=QF4tZwvbs1ZftcMNFguhyl6GXkIOnq69VhpJawIqOJM,2550
trufflepig/analyze/cancer_type_context.py,sha256=TrKbhFpbfy5qSh7FQRfEOek7uGeZVFXlHnmVy5lMR-Q,25040
trufflepig/analyze/comparison.py,sha256=ADStIhlCmFuDoa3k-W-5iYZf6E-3gZoy3z3MSUrtQWc,16868
trufflepig/analyze/deltas.py,sha256=NBTfWF922Wms3j5jlpSxeTJPi4oMFrHZgG3PwGshhIg,29637
trufflepig/analyze/flow.py,sha256=_8wQZiZLyhYA4jQo7Psxbw8kDc2Us3cyTlhKrNFjkls,9067
trufflepig/analyze/models.py,sha256=fAxIU5PG09mWOm4o4ESAVxwCPtJVKtVPlUfuHKpFvKE,6984
trufflepig/data/heme-tumor-up-vs-matched-normal.csv,sha256=vuCfQWFgQS5rfgUDEhhVDtXTOIhhNbtOv1hyyY7u2LE,1340
trufflepig/data/subtype-deconvolved-expression.csv.gz,sha256=kvSTRZQw7BCEe6rYx74bJsOrWXFUUbq-CE2Q5kPn7nA,12117765
trufflepig/data/tcga-deconvolved-expression.csv.gz,sha256=5MOFV4VsBvomlH8F5GacvtR5zXAAkhZzt2xpevbEAvo,8647978
trufflepig/data/therapeutic-agents.csv,sha256=5EFCy_Wb-hNLSbQBpMIgDNfV3ilLwjTineTg0fVWWTU,57385
trufflepig/data/therapeutic-targets.csv,sha256=W7XjvXzf02k8kXFlyhfeWCGW8OkVbBg6xIH2W0FxOdM,33150
trufflepig/data/tumor-up-vs-matched-normal.csv,sha256=Y6A4fXNf3wzH7ljmmQZCLOMYjTDCYwGjcquS7jMS0iQ,30457
trufflepig/decomposition/__init__.py,sha256=_pF78wd-N5-IWwPxE_08Vgxe6AePYJAHx-mkrXTK7Jw,1527
trufflepig/decomposition/engine.py,sha256=7yCmTR_fhOZ9B_XfvT-YxWYeU-2ZLjaVBfWsbP45cPY,59894
trufflepig/decomposition/panels.py,sha256=2lJ3wXzDf2lFOBltpMi6A87xqdX2ReM4KWFothMVk7o,18039
trufflepig/decomposition/plot.py,sha256=IS8Nf14pzF4zeSgugbrjee2qBk35HI0hQsfg2p0WOSM,20118
trufflepig/decomposition/signature.py,sha256=ISwhJdRMNv_jEGNsAcOLLB9Qm77_GcINAqpM_rVC8ro,24398
trufflepig/decomposition/subtype_refs.py,sha256=LjcXA3hFjH0sATkS9ziS_X-eZT-bPu0jUlLGooGu_I4,16298
trufflepig/decomposition/templates.py,sha256=oy0zfV5fN17dkpj_m6PiuhTcbgteCfhOGvYSCuHui5o,19056
trufflepig/stages/__init__.py,sha256=b6lelmE2Y5LgGqEj_TIL8wxK1WQeyqmFIEIirLRFRb8,1223
trufflepig/web/__init__.py,sha256=yQ9rtxKkPsRrXPq0GaWEwHM1f5PLzE9n7Ie1EgLphTc,825
trufflepig/web/app.py,sha256=JA95lI8ABmTZrTuFOtKWSwPwuKTQz9AyOEZ3SdksTaY,15733
trufflepig/web/runs.py,sha256=Nt2gA0X961CMwehSv9mWfns-kUkyj-IyxhpLAB3J2Lg,12698
trufflepig/web/static/app.js,sha256=ujj8tzbCuH-FVcbLAPrYQ2Iay40C5IPDT0W0k9BC9mo,3314
trufflepig/web/static/index.html,sha256=LY63rkpbBAZcR9hSdmW_E423YRoyAfNNjdR11uOiwOQ,2270
trufflepig/web/static/style.css,sha256=g8GKOuS0ynupY9T1kUr6EoiBIL9MrKHHGbCBZUPcOSw,3190
pirl_trufflepig-1.15.0.dist-info/METADATA,sha256=nFfkmIVB9L1YgI2W-j2AlcXKKSrqWCFPF6_tbutr_iQ,13623
pirl_trufflepig-1.15.0.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
pirl_trufflepig-1.15.0.dist-info/entry_points.txt,sha256=mXwn2d38onrRtUyVkPjmyMbvBWWRadzoRLvBYIiPgss,51
pirl_trufflepig-1.15.0.dist-info/top_level.txt,sha256=5-ZDL5rMysoV8tAKdk8vuqXR7hb6jJ_GZ0azxX5Bme8,11
pirl_trufflepig-1.15.0.dist-info/RECORD,,
