Metadata-Version: 2.4
Name: amp-depth-viz
Version: 0.1.2
Summary: A short description of your package
Author: Josh Zhang
Author-email: josh.zhang@mh.org.au
Requires-Python: >=3.11
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Programming Language :: Python :: 3.14
Requires-Dist: bokeh (>=3.8.1)
Requires-Dist: numpy (>=2.3.5)
Requires-Dist: pandas (>=2.3.3)
Requires-Dist: scipy (>=1.16.3)
Description-Content-Type: text/markdown

# amp-depth-viz
## visualise amplicon genome coverage by bokeh using mosdepth output

## install
```
    git clone https://github.com/abcdtree/amp-depth-viz.git
    cd amp-depth-viz
    conda create -y conda.yaml
    pip install dist/amp_depth_viz-0.0.1.tar.gz
```

## Usage
```
    amp-depth-viz src/amp_depth_viz/sample/sample_input.bed --ylim 300 --threshold 40 --output test.html
```

