pandas
tabulate
natsort
ruranges>=0.1.8
gtfreader>=0.3.0

[add-ons]
pyranges1[fast-io]
pyranges1[remote]
runlength>=0.1
bamread
pysam
pyfaidx
pyBigWig
pybigtools
joblib

[all]
pyranges1[add-ons]
pyranges1[dev]
pyranges1[docs]
pyranges1[cli]

[cli]
fire

[dev]
tox
ruff==0.14.1
pyright
pandas-stubs<3
types-tabulate
pytest-watcher
pytest-xdist

[docs]
sphinx
sphinx_rtd_theme
sphinx-autoapi
sphinxcontrib-napoleon

[fast-io]
pyarrow

[remote]
fsspec
