Metadata-Version: 2.5
Name: plOTme_for_Orbitrap
Version: 0.0.1
Summary: A set of Python scripts to plot CSV data extracted from Thermo Scientific FreeStyle
Project-URL: Homepage, https://github.com/cameronhollick/plOTme
Project-URL: Issues, https://github.com/cameronhollick/plOTme/issues
Author-email: Cameron Hollick <cameron.hollick@york.ac.uk>
License-Expression: MIT
License-File: LICENSE
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.14
Description-Content-Type: text/markdown

## plOTme: A little set of scripts for visualising Orbitrap data
A few Python scripts designed to aid in the plotting of MS2 and associated HPLC data obtained on an Orbitrap. After initial data processing in FreeStyle, export your data in CSV format, load things into the relevant script, and let Python take care of the rest.

### General-purpose scripts

***FLASC:*** <ins>F</ins>u<ins>l</ins>l m<ins>as</ins>s spe<ins>c</ins>trometry plots. Feed a folder with your CSVs into the script, and it'll plot up all your data into individual MS1 spectra.

***FLEX:*** <ins>F</ins>u<ins>l</ins>l <ins>ex</ins>tracted ion chromatograms. Feed a folder with your CSVs into the script, and it'll plot up all your data into individual EICs.

### Scripts for studying changing injection volumes

***SINCH:*** <ins>S</ins>tudying <ins>in</ins>jection volumes by <ins>ch</ins>romatogram comparison. Designed for plotting chromatograms on the same set of axes where the independent factor is the injection volume (i.e. runtime is the same across all samples). By default, reads the first 5 CSV files in a user-specified folder and assigns them to 1, 2, 5, 10 and 20 μL (can be changed in the script).

***SINTA:*** <ins>S</ins>tudying <ins>in</ins>jection volumes by <ins>ta</ins>ndem mass spectrometry. Coming soon.