LICENSE
README.md
pyproject.toml
exomeflow/__init__.py
exomeflow/acmg_classification.py
exomeflow/alignment.py
exomeflow/annotation.py
exomeflow/bam_processing.py
exomeflow/cli.py
exomeflow/cnv.py
exomeflow/config.py
exomeflow/fastp.py
exomeflow/filtering.py
exomeflow/hpo_annotation.py
exomeflow/joint_genotyping.py
exomeflow/logger.py
exomeflow/pipeline.py
exomeflow/recalibration.py
exomeflow/reporting.py
exomeflow/setup_env.py
exomeflow/somatic.py
exomeflow/steps.py
exomeflow/utils.py
exomeflow/variant_calling.py
exomeflow.egg-info/PKG-INFO
exomeflow.egg-info/SOURCES.txt
exomeflow.egg-info/dependency_links.txt
exomeflow.egg-info/entry_points.txt
exomeflow.egg-info/requires.txt
exomeflow.egg-info/top_level.txt
tests/test_acmg_classification.py
tests/test_config.py
tests/test_hpo_annotation.py
tests/test_step_commands.py
tests/test_steps.py
tests/test_system_resources.py
tests/test_utils.py