LICENSE
README.md
pyproject.toml
src/jsrc/__init__.py
src/jsrc/cli.py
src/jsrc/core.py
src/jsrc.egg-info/PKG-INFO
src/jsrc.egg-info/SOURCES.txt
src/jsrc.egg-info/dependency_links.txt
src/jsrc.egg-info/entry_points.txt
src/jsrc.egg-info/requires.txt
src/jsrc.egg-info/top_level.txt
src/jsrc/analyze/__init__.py
src/jsrc/analyze/bootstrap_phylo.py
src/jsrc/analyze/core.py
src/jsrc/analyze/motif.py
src/jsrc/analyze/msa_consensus.py
src/jsrc/analyze/phylo.py
src/jsrc/analyze/qc.py
src/jsrc/analyze/snpindel.py
src/jsrc/genome/__init__.py
src/jsrc/genome/ani.py
src/jsrc/genome/cai.py
src/jsrc/genome/codon.py
src/jsrc/genome/compare.py
src/jsrc/genome/core.py
src/jsrc/genome/cpg.py
src/jsrc/genome/density.py
src/jsrc/genome/distance.py
src/jsrc/genome/gc_skew.py
src/jsrc/genome/island.py
src/jsrc/genome/kaks.py
src/jsrc/genome/motif_scan.py
src/jsrc/genome/orf.py
src/jsrc/genome/palindrome.py
src/jsrc/genome/promoter.py
src/jsrc/genome/repeat.py
src/jsrc/genome/stats.py
src/jsrc/genome/window.py
src/jsrc/grn/__init__.py
src/jsrc/grn/anno2json.py
src/jsrc/grn/build.py
src/jsrc/grn/centrality.py
src/jsrc/grn/core.py
src/jsrc/grn/net2json.py
src/jsrc/grn/serve.py
src/jsrc/grn/sources/index.html
src/jsrc/grn/sources/script.js
src/jsrc/grn/sources/style.css
src/jsrc/job/__init__.py
src/jsrc/job/config.py
src/jsrc/job/core.py
src/jsrc/job/format.py
src/jsrc/job/gc.py
src/jsrc/job/history.py
src/jsrc/job/kill.py
src/jsrc/job/logs.py
src/jsrc/job/ls.py
src/jsrc/job/process.py
src/jsrc/job/submit.py
src/jsrc/job/top.py
src/jsrc/plot/__init__.py
src/jsrc/plot/chromosome.py
src/jsrc/plot/circoslite.py
src/jsrc/plot/cis.py
src/jsrc/plot/core.py
src/jsrc/plot/domain.py
src/jsrc/plot/dotplot.py
src/jsrc/plot/exon.py
src/jsrc/plot/gene.py
src/jsrc/plot/heart.py
src/jsrc/plot/rose.py
src/jsrc/plot/sources/heart.html
src/jsrc/plot/sources/rose.html
src/jsrc/seq/__init__.py
src/jsrc/seq/align.py
src/jsrc/seq/complexity.py
src/jsrc/seq/convert.py
src/jsrc/seq/core.py
src/jsrc/seq/digest.py
src/jsrc/seq/entropy.py
src/jsrc/seq/extract.py
src/jsrc/seq/fetch.py
src/jsrc/seq/kmer.py
src/jsrc/seq/primer.py
src/jsrc/seq/protparam.py
src/jsrc/seq/qc.py
src/jsrc/seq/random.py
src/jsrc/seq/rename.py
src/jsrc/seq/translate.py
src/jsrc/vision/__init__.py
src/jsrc/vision/core.py
src/jsrc/vision/efd.py
src/jsrc/vision/extract.py
src/jsrc/vision/traits.py
tests/test_analyze_bootstrap.py
tests/test_analyze_extra.py
tests/test_analyze_phylo.py
tests/test_cli_error_behavior.py
tests/test_cli_module_flows.py
tests/test_genome_ani.py
tests/test_genome_cai.py
tests/test_genome_codon_kmer.py
tests/test_genome_compare.py
tests/test_genome_cpg.py
tests/test_genome_density.py
tests/test_genome_distance.py
tests/test_genome_gc_skew.py
tests/test_genome_island.py
tests/test_genome_kaks.py
tests/test_genome_motif_scan.py
tests/test_genome_orf.py
tests/test_genome_palindrome.py
tests/test_genome_promoter.py
tests/test_genome_repeat.py
tests/test_genome_stats.py
tests/test_genome_window.py
tests/test_grn_conversion.py
tests/test_job_core.py
tests/test_job_portability.py
tests/test_plot_commands.py
tests/test_plot_core.py
tests/test_plot_rose.py
tests/test_progress.py
tests/test_seq_align.py
tests/test_seq_complexity.py
tests/test_seq_convert.py
tests/test_seq_core.py
tests/test_seq_digest.py
tests/test_seq_entropy.py
tests/test_seq_extract.py
tests/test_seq_fetch.py
tests/test_seq_primer.py
tests/test_seq_promoter.py
tests/test_seq_protparam.py
tests/test_seq_qc.py
tests/test_seq_random.py
tests/test_seq_rename.py
tests/test_seq_translate.py
tests/test_vision_efd.py
tests/test_vision_extract.py